Install Grigorieff lab software » History » Version 4
Neil Voss, 05/17/2010 09:36 AM
| 1 | 1 | Neil Voss | h1. Install Grigorieff lab software |
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| 3 | 2 | Neil Voss | The Grigorieff lab at Brnadies provides several individual programs that are used in Appion. See their "main software page":http://emlab.rose2.brandeis.edu/software |
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| 5 | h2. Software used in Appion: |
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| 7 | 3 | Neil Voss | h3. Frealign: Refinement of 3D reconstructions using single-particle images |
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| 9 | 4 | Neil Voss | * Grigorieff, N. 2007. FREALIGN: high-resolution refinement of single particle structures. J Struct Biol. 157:117–125. |
| 10 | * Grigorieff, N. 1998. Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22 A in ice. J Mol Biol. 277:1033-46. |
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| 11 | * Wolf, M, DeRosier DJ, Grigorieff N. 2006. Ewald sphere correction for single-particle electron microscopy. Ultramicroscopy. 106:376-82. |
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| 12 | * Stewart, A, Grigorieff N. 2004. Noise bias in the refinement of structures derived from single particles. Ultramicroscopy. 102:67-84. |
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| 14 | 3 | Neil Voss | h3. Ctffind3 & ctftilt: CTF estimation |
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| 16 | 4 | Neil Voss | * Mindell, JA, Grigorieff N. 2003. Accurate determination of local defocus and specimen tilt in electron microscopy. J Struct Biol. 142:334-47. |
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| 18 | h3. Signature: Particle selection from micrographs |
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| 20 | 4 | Neil Voss | * Chen, JZ, Grigorieff N. 2007. SIGNATURE: a single-particle selection system for molecular electron microscopy. J Struct Biol. 157:168-73. |
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| 22 | h3. Rmeasure: Resolution measurement |
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| 24 | 4 | Neil Voss | * Grigorieff, N. 2000. Resolution measurement in structures derived from single particles. Acta Crystallogr D Biol Crystallogr. 56:1270-7. |
| 25 | * Sousa, D, Grigorieff N. 2007. Ab initio resolution measurement for single particle structures. J Struct Biol. 157:201-10. |
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| 26 | 1 | Neil Voss | ______ |
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| 28 | [[Install UCSF Chimera|< Install UCSF Chimera]] | [[Compile FindEM|Compile FindEM >]] |
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| 30 | ______ |