Install Grigorieff lab software » History » Revision 4
Revision 3 (Neil Voss, 05/17/2010 09:36 AM) → Revision 4/18 (Neil Voss, 05/17/2010 09:36 AM)
h1. Install Grigorieff lab software The Grigorieff lab at Brnadies provides several individual programs that are used in Appion. See their "main software page":http://emlab.rose2.brandeis.edu/software h2. Software used in Appion: h3. Frealign: Refinement of 3D reconstructions using single-particle images * # Grigorieff, N. 2007. FREALIGN: high-resolution refinement of single particle structures. J Struct Biol. 157:117–125. * # Grigorieff, N. 1998. Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22 A in ice. J Mol Biol. 277:1033-46. * # Wolf, M, DeRosier DJ, Grigorieff N. 2006. Ewald sphere correction for single-particle electron microscopy. Ultramicroscopy. 106:376-82. * # Stewart, A, Grigorieff N. 2004. Noise bias in the refinement of structures derived from single particles. Ultramicroscopy. 102:67-84. h3. Ctffind3 & ctftilt: CTF estimation * # Mindell, JA, Grigorieff N. 2003. Accurate determination of local defocus and specimen tilt in electron microscopy. J Struct Biol. 142:334-47. h3. Signature: Particle selection from micrographs * # Chen, JZ, Grigorieff N. 2007. SIGNATURE: a single-particle selection system for molecular electron microscopy. J Struct Biol. 157:168-73. h3. Rmeasure: Resolution measurement * # Grigorieff, N. 2000. Resolution measurement in structures derived from single particles. Acta Crystallogr D Biol Crystallogr. 56:1270-7. * # Sousa, D, Grigorieff N. 2007. Ab initio resolution measurement for single particle structures. J Struct Biol. 157:201-10. ______ [[Install UCSF Chimera|< Install UCSF Chimera]] | [[Compile FindEM|Compile FindEM >]] ______