Install Protomo2 » History » Version 1
Amber Herold, 08/24/2012 12:45 PM
| 1 | 1 | Amber Herold | h1. Install Protomo2 |
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| 5 | # download and unzip the protomo file from hanspeter - http://www.sb.fsu.edu/~winkler/protomo/protomo-2.2.0.tar.bz2 |
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| 6 | # download and unzip the deplib file from hanspeter - http://www.sb.fsu.edu/~winkler/protomo/deplibs.tar.bz2 |
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| 9 | Get the libs and devel of these packages: |
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| 10 | Try yum: |
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| 11 | <pre> |
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| 12 | yum search ... |
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| 13 | </pre> |
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| 15 | * TIFF library (www.libtiff.org) |
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| 16 | * FFTW fourier transforms (www.fftw.org) |
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| 17 | Version 2 is required, compiled for single precision with type prefix (configure options: |
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| 18 | –enable-shared –enable-float –enable-type-prefix) |
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| 19 | * GTK+, the GIMP toolkit (www.gtk.org) |
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| 20 | * GtkGLExt, OpenGL Extension to GTK+ (gtkglext.sourceforge.net) |
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| 21 | * GNU plotutils (www.gnu.org/software/plotutils) |
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| 22 | * EMAN2 (blake.bcm.edu/emanwiki/EMAN2) |
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| 24 | test |
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| 25 | <pre> |
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| 26 | tomoalign-gui -help |
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| 27 | </pre> |
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| 29 | This is the current, but not yet officially released version: |
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| 31 | Marker-free tilt series alignment: |
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| 33 | http://www.sb.fsu.edu/~winkler/protomo/protomo-2.2.0.tar.bz2 |
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| 34 | http://www.sb.fsu.edu/~winkler/protomo/protomo-users-guide-2.0.12.pdf |
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| 36 | Tutorial: |
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| 38 | http://www.sb.fsu.edu/~winkler/protomo/protomo-tutorial-2.0.12.pdf |
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| 39 | http://www.sb.fsu.edu/~winkler/protomo/protomo-tutorial-2.0.12.tar.bz2 |
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| 41 | 3rd-party libraries: |
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| 42 | http://www.sb.fsu.edu/~winkler/protomo/deplibs.tar.bz2 |