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Install SPIDER » History » Revision 13

Revision 12 (Neil Voss, 05/13/2010 09:08 AM) → Revision 13/32 (Neil Voss, 05/13/2010 09:08 AM)

h1. Install SPIDER 

 h2. Install documentation at wadsworth.org 

 the Wadsworth Institute provides "detailed documentation":http://www.wadsworth.org/spider_doc/spider/docs/spider-inst-linux.html" documentation"http://www.wadsworth.org/spider_doc/spider/docs/spider-inst-linux.html" on how to install SPIDER on various systems. Below we cover a _our way_ to get it working on your system. 

 h2. Download SPIDER binary "from wadsworth.org":http://www.wadsworth.org/spider_doc/spider/docs/spi-register.html (250 MiB) 

 bq. Most of our SPIDER scripts were originally designed around SPIDER v14 and v15, but we are diligently working toward compatibility with SPIDER v18. That said you are probably best off using the newest version of SPIDER (v18.10 as of May 2010) and then reporting any bugs to us. 

 h2. Extract the archive 

 <pre>tar -zxvf spiderweb.18.10.tar.gz</pre> 

 bq. The archive will create 3 folders: spider, spire, and web. At this time only the *spider* program is used within Appion, you can safely ignore web and spire. 

 h2. Install SPIDER 

 * Copy the spider folder to global directory: 
 <pre>sudo mv -v spider /usr/local/</pre> 

 * Next, you need to determine which version of the spider binary you need to use on your system. 
 <pre> 
 cd /usr/local/spider/bin 
 ls spider* 
   spider_linux             spider_linux_mp_intel64    spider_linux_mp_opt64    spider_osx_64_pgi 
   spider_linux_mp_intel    spider_linux_mpi_opt64     spider_osx_32_pgi 
 </pre> 


 <pre>sudo ln -sv /usr/local/spider/bin/spider /usr/local/</pre> 

 h2. Set environmental variables 

 h3. For @BASH@, create an spider.sh and add the following lines: 

 <pre> 
 export SPIDER=/usr/local/spider 
 export SPMAN_DIR=${SPIDER}/man 
 export SPPROC_DIR=${SPIDER}/proc 
 export SPRGB_DIR=${SPIDER}/rgb 
 </pre> 

 h3. For @C@ shell, create an spider.csh and add the following lines: 

 <pre> 
 setenv SPIDER /usr/local/spider 
 setenv SPMAN_DIR ${SPIDER}/man 
 setenv SPPROC_DIR ${SPIDER}/proc 
 setenv SPRGB_DIR ${SPIDER}/rgb 
 </pre> 

 h3. And then add it to the global /etc/profile.d/ folder 

 <pre> 
 sudo cp -v spider.sh /etc/profile.d/spider.sh 
 sudo chmod 755 /etc/profile.d/spider.sh 

 -or- 

 sudo cp -v spider.csh /etc/profile.d/spider.csh 
 sudo chmod 755 /etc/profile.d/spider.csh 
 </pre> 


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