Myami code diagram¶

• Sinedon
  • Generates queries.
  • Uses Python to generate mysql
• Appion
  • Core image processing code.
  • Does not use numextension but does use radermacher
  • Contains Ace2 objective C which replaces Matlab
  • Mostly Python code.
• Leginon
  • Microscope control
  • Installed Application
  • Includes a GUI
  • This is the Python part of Leginon
• Imageviewer
  • Should be moved into the leginon directory
  • Contains Python code
• Pyscope
  • Contains Python code
• Comarray
  • C code
  • Pyscope needs this in certain cases
• Myamiweb
  • Used to be called dbem
  • Contains Leginon and Appion web parts
  • Includes the PHP part of Leginon
  • The old “project” code has been migrated here and phased out.
• Phpami
  • Contains PHP code
  • Denis made these 3 include files separate so they would not be public.
  • These files will eventually be moved to myamiweb and this folder will phase out.
• Php_mrc
  • PHP extension to myamiweb to read mrc files
  • Contains C code
• Numextension
  • C Code wrapped in Python
  • Implements canny edge detection
  • Used extensively
• Radermacher
  • C Code
  • Could be merged with numextension or appion
• Libcv
  • C Code
  • Computer vision library
• Pyami
  • Common Python libraries used by appion and leginon
  • Image processing
  • Randoms