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Package alias table

Those not mentioned here uses the original names in the call.

program package name version appion executable alias Accessible
MotionCor2 1.0.2 motioncor2 shell
motioncorr v2.0 from Purdue 2.0 dosefgpu_driftcorr shell
DE_process_frames.py 2.7.1 deProcessFrames.py pythonpath
ctffind4 4.1.5 ctffind4 shell
Gctf 1.06 gctfCurrent shell
ctftilt 1.5 ctftilt.exe shell
FindEM 20/10/01 findem64.exe shell
Gautomatch 0.53 gautomatch shell
Spider 18.10 spider shell
frealign 9.11 frealign_v9.exe and frealign_v9_mp.exe shell
xmipp2 cl2d* 2.4 xmipp_mpi_class_averages shell
xmipp3 cl2d* 3.1 xmipp_classify_CL2D shell
EMAN1 proc2d 1.9 proc2d shell
  • default environment is xmipp2. All other xmipp functions wraps around xmipp2.
  • xmipp3 conflict with xmipp2 is resolved in appion/bin/runXmipp3CL2D.py with a line of code
    csh -c 'modulecmd python load xmipp/3.1'
    

    Change it if desired.

Updated by Anchi Cheng over 6 years ago · 2 revisions