Appion

h2. Package alias table

Those not mentioned here uses the original names in the call.

|program package name|version|appion executable alias|Accessible|

|MotionCor2|10-19-2016|motioncor2|shell|

|motioncorr v2.0 from Purdue|2.0|dosefgpu_driftcorr|shell|

|DE_process_frames.py|2.7.1|deProcessFrames.py|pythonpath|

|ctffind4|4.1.5|ctffind4|shell|

|Gctf|1.06|gctfCurrent|shell|

|ctftilt|1.5|ctftilt.exe|shell|

|FindEM|20/10/01|findem64.exe|shell|

|Gautomatch|0.53|gautomatch|shell|

|Spider|18.10|spider|shell|

|frealign|9.11|frealign_v9.exe and frealign_v9_mp.exe|shell|

|xmipp2 cl2d*|2.4|xmipp_mpi_class_averages|shell|

|xmipp3 cl2d*|3.1|xmipp_classify_CL2D|shell|

|EMAN1 proc2d|1.9|proc2d|shell|

* default environment is xmipp2.  All other xmipp functions wraps around xmipp2.

* xmipp3 conflict with xmipp2 is resolved in appion/bin/runXmipp3CL2D.py with a line of code

<pre>

csh -c 'modulecmd python load xmipp/3.1'

</pre>

Change it if desired.