Process Images¶

Testing simple appion processing job submission¶

Upload template is a good example to try:

1. Create a small mrc image as your template to be uploaded.
2. Select Upload template in Import tools in the appionweb processing menu of an existing session.
3. Type in the needed information.
4. When you finish filling the form, instead of clicking on "Just show command", choose your processing host and run the job by clicking "Upload Template".
5. For simple process such as this, the webpage will take a little while to refresh until the job is completed.
6. If you get the message "Template is uploaded", the process is successful and if you refresh the page you will find the template in the available list.

Testing PBS-required appion processing job submission¶

Particle selection such as DogPicker is a good example to try:

1. Click on DoG Picking under Particle Selection menu
2. Enter the required parameters
3. When you finish filling a form for an appion processing, choose your processing host and run the job. Pages for monitoring the job become available after the job is queued and subsequently begins running. If the status appears as "Running or Queued" at first, the setup is likely correct.
4. After a while, the process will be completed and the status becomes "Done" when you click to have the Status updated on the page.