RCT Volume¶

General Workflow:¶

1. Make sure that appropriate run names and directory trees are specified. Appion increments names automatically, but users are free to specify proprietary names and directories.
2. Enter a description of your run into the description box.
3. Select the aligned stack to use for titled particle parameters from the drop down menu. Note that stacks can be identified in this menu by clustering or feature analysis run ID. Also note that there will be no drop down menu for this option if the RCT Volume page was accessed directly from the clustering run output webpage, because these parameters are then already known.
4. Make sure that "Commit to Database" box is checked. (For test runs in which you do not wish to store results in the database this box can be unchecked).
5. Click on "Run Maxlike Alignment" to submit your job to the cluster. Alternatively, click on "Just Show Command" to obtain a command that can be pasted into a UNIX shell.

Notes, Comments, and Suggestions:¶