Appion

h1. Stacks

After particle selection, individual particles are boxed out of the micrographs and placed into stack files for further processing.

h2. Available Stack Tools:

* [[Stack Creation]]: Box particles selected from micrographs.  Apply CTF and Astigmatism correction.

* [[More Stack Tools]]: Center, filter, clean-up, mask, etc particle stacks.

** [[Combine Stacks]]

** [[View Stacks]]

** [[Alignment SubStacks]]

** [[Jumpers SubStack]]

** [[Convert Stack into Particle Picks]]

h2. Appion SideBar Snapshot:

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h2. Notes, Comments, and Suggestions:

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[[CTF Estimation|< CTF Estimation]] | [[Particle Alignment|Particle Alignment >]]

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