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Start with existing CentOS installation » History » Revision 66

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Amber Herold, 04/06/2010 12:43 PM


Start with existing CentOS 5.3 64-bit installation

3 Download additional software

Download additional Software


4 MRC PHP Extension Installation and Testing

MRC PHP Extension Installation and Testing


5 Setup MySQL (appiondata) databases

Setup MySQL database


6 Compile and setup Appion python programs

Setup Appion programs


7 Install webpages (myamiweb)

Refer to Web Server Installation

TODO: The next steps have already been completed, grab any extra info from here and move to other location.

Install DBEM and project php source

Please consult the other Install guide

Configuration

configure apache

  • allow REMOTE_HOST lookups in apache
$ sudo nano /etc/httpd/conf/httpd.conf
  • turn HostnameLookups to On
HostnameLookups On
  • restart the webserver
$ sudo /sbin/service httpd restart

configure project_1_2, dbem_1_5_1, and dbem_1_5_1/processing

Please consult the other Install guide

Initialize database tables from the web tools

Please consult Create a test project and processing database

Potential problems

Firewall settings

You may need to configure your firewall to allow incoming HTTP (port 80) and MySQL (port 3306) traffic:

$ system-config-securitylevel

Security-enhanced linux

Security-enhanced linux may be preventing your files from loading. To fix this run the following command:

$ sudo /usr/bin/chcon -R -t httpd_sys_content_t /var/www/html/

see this website for more details on SELinux


8 Install external packages

Please follow individual package installation instruction provided with them

Compile Xmipp for OpenMPI

Install Xmipp


9 Install a PBS job submission system

Install PBS


10 Do testing (Start at 4 of any flavor)

Get started with a project
This has some repeated information.
Basically need to do the following:

  1. Add a group
  2. Add a user
  3. Add instruments
  4. Create a project
  5. Create the project database
  6. Upload images to a new session
  7. View the images
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Updated by Amber Herold over 14 years ago · 66 revisions