Appion

h1. Upload Stack

The user is able to upload particle stack to be used within Appion processing. 

h2. General Workflow:

*To launch:* 

# The user starts from an existing session to which the stack will be added.

# The user provides the full path and name of the stack (e.g. /home/abc/start.hed)

# The user provides a brief description for the stack

# The user inputs the particle diameter in Angstrom

# The user inputs the pixel size for the model

# The user checks if the stack is CTF corrected (default: unchecked)

# The user checks if the particles will be normalized (default: checked)

# The user checks if the stack is committed to the database (default: checked)

*Output:*

# Once the stack is uploaded, it will appear under "stacks".

# The stack will be available for subsequent processing.

h2. Notes, Comments, and Suggestions:

# A session must have a least one image for this to work.  Please follow [[Upload Images to a new Project Session]] to upload an image at the same scope and camera parameter as the stack first.

# Stack must be in IMAGIC format (.hed and .img)

!http://emg.nysbc.org/attachments/277/Picture_81.png!

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[[Upload More Images|< Upload More Images]] | [[Image Assessment|Image Assessment >]]

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