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Amber Herold, 08/23/2010 03:34 PM
Wrapper Testing¶
The following files contain a call to showOrSubmitCommand() or submitAppionJob(). These function calls need to be executed to verify the following:
1. Commands using showOrSubmitCommand should pre-pend the Appion Wrapper Path defined in the config file when both Show Command and Run Command are selected by the user.
2. Commands using submitAppionJob should pre-pend the path when Run Command is selected.
3. Commands using submitAppionJob should NOT pre-pend the path when Just Show Command is selected. In this case, the user will need to manually modify the command prior to executing it to include the wrapper path.
| Filename | uses new showOrSubmitCommand() | uses old submitAppionJob() | Show Command (pass/fail) | Sumbit Command (pass/fail) |
|---|---|---|---|---|
| alignSubStack.php | X | |||
| applyJunkCutoff.php | X | |||
| bootstrappedAngularReconstitution.php | X | |||
| centerStack.php | X | |||
| coranSubStack.php | X | |||
| createmodel.php | X | |||
| createSyntheticDataset.php | X | |||
| emdb2density.php | X | |||
| imagicMSA.php | X | |||
| jumpSubStack.php | X | |||
| makegoodavg.php | X | |||
| multiReferenceAlignment.php | X | |||
| pdb2density.php | X | |||
| postproc.php | X | |||
| prepareFrealign.php | X | |||
| runAppionScript.php.template | X | |||
| runMaskMaker.php | X | |||
| runMaxLikeAlign.php | X | |||
| sortJunk.php | X | |||
| subStack.php | X | |||
| uploadFrealign.php | X | |||
| uploadmodel.php | X | |||
| uploadParticles.php | X | |||
| uploadrecon.php | X | |||
| uploadstack.php | X | |||
| uploadtemplate.php | X | |||
| uploadTemplateStack.php | X | |||
| uploadtomo.php | X | |||
| uploadXmippRecon.php | X | |||
| imagic3d0.php | X | |||
| imagic3dRefine.php | X | |||
| runAce2.php | X | |||
| runAffinityProp.php | X | |||
| runClusterCoran.php | X | |||
| runCombineStacks.php | X | |||
| runCoranClassify.php | X | |||
| runCtfEstimate.php | X | |||
| runDogPicker.php | X | |||
| runEdIterAlignment.php | X | |||
| runEmanRefine2d.php | X | |||
| runImgRejector.php | X | |||
| runJpgMaker.php | X | |||
| runKerDenSom.php | X | |||
| runLoopAgain.php | X | |||
| runMakeStack2.php | X | |||
| runMaskMaker.php | X | |||
| runOtrVolume.php | X | |||
| runPyAce.php | X | |||
| runRctVolume.php | X | |||
| runRefBasedAlignment.php | X | |||
| runRefBasedMaxlikeAlign.php | X | |||
| runRotKerDenSom.php | X | |||
| runSignature.php | X | |||
| runSpiderNoRefAlignment.php | X | |||
| runStackIntoPicks.php | X | |||
| runSubTomogram.php | X | |||
| runTemplateCorrelator.php | X | |||
| runTiltAligner.php | X | |||
| runTiltAutoAligner.php | X | |||
| runTomoAligner.php | X | |||
| runTomoAverage.php | X | |||
| runTomoMaker.php | X | |||
| runTopolAlign.php | X | |||
| runUploadMaxLike.php | X | |||
| uploadimage.php | X |
Updated by Amber Herold about 15 years ago · 63 revisions