Wrapper Testing » History » Revision 2
Revision 1 (Amber Herold, 08/23/2010 03:34 PM) → Revision 2/63 (Amber Herold, 08/23/2010 03:34 PM)
h1. Wrapper Testing
Issue #828
The following files contain a call to showOrSubmitCommand() or submitAppionJob(). These function calls need to be executed to verify the following:
1. Commands using showOrSubmitCommand should pre-pend the Appion Wrapper Path defined in the config file when both Show Command and Run Command are selected by the user.
2. Commands using submitAppionJob should pre-pend the path when Run Command is selected.
3. Commands using submitAppionJob should NOT pre-pend the path when Just Show Command is selected. In this case, the user will need to manually modify the command prior to executing it to include the wrapper path.
|_.Filename|_.uses new showOrSubmitCommand()|_.uses old submitAppionJob()|_.Show Command (pass/fail)|_.Sumbit Command (pass/fail)|
|alignSubStack.php|X||||
|applyJunkCutoff.php|X||||
|bootstrappedAngularReconstitution.php|X||||
|centerStack.php|X||||
|coranSubStack.php|X||||
|createmodel.php|X||||
|createSyntheticDataset.php|X||||
|emdb2density.php|X||||
|imagicMSA.php|X||||
|jumpSubStack.php|X||||
|makegoodavg.php|X||||
|multiReferenceAlignment.php|X||||
|pdb2density.php|X||||
|postproc.php|X||||
|prepareFrealign.php|X||||
|runAppionScript.php.template|X||||
|runMaskMaker.php|X||||
|runMaxLikeAlign.php|X||||
|sortJunk.php|X||||
|subStack.php|X||||
|uploadFrealign.php|X||||
|uploadmodel.php|X||||
|uploadParticles.php|X||||
|uploadrecon.php|X||||
|uploadstack.php|X||||
|uploadtemplate.php|X||||
|uploadTemplateStack.php|X||||
|uploadtomo.php|X||||
|uploadXmippRecon.php|X||||
|imagic3d0.php||X|||
|imagic3dRefine.php||X|||
|runAce2.php||X|||
|runAffinityProp.php||X|||
|runClusterCoran.php||X|||
|runCombineStacks.php||X|||
|runCoranClassify.php||X|||
|runCtfEstimate.php||X|||
|runDogPicker.php||X|||
|runEdIterAlignment.php||X|||
|runEmanRefine2d.php||X|||
|runImgRejector.php||X|||
|runJpgMaker.php||X|||
|runKerDenSom.php||X|||
|runLoopAgain.php||X|||
|runMakeStack2.php||X|||
|runMaskMaker.php||X|||
|runOtrVolume.php||X|||
|runPyAce.php||X|||
|runRctVolume.php||X|||
|runRefBasedAlignment.php||X|||
|runRefBasedMaxlikeAlign.php||X|||
|runRotKerDenSom.php||X|||
|runSignature.php||X|||
|runSpiderNoRefAlignment.php||X|||
|runStackIntoPicks.php||X|||
|runSubTomogram.php||X|||
|runTemplateCorrelator.php||X|||
|runTiltAligner.php||X|||
|runTiltAutoAligner.php||X|||
|runTomoAligner.php||X|||
|runTomoAverage.php||X|||
|runTomoMaker.php||X|||
|runTopolAlign.php||X|||
|runUploadMaxLike.php||X|||
|uploadimage.php||X|||