Wrapper Testing » History » Version 6
Amber Herold, 08/25/2010 10:03 AM
| 1 | 1 | Amber Herold | h1. Wrapper Testing |
|---|---|---|---|
| 2 | |||
| 3 | 2 | Amber Herold | Issue #828 |
| 4 | |||
| 5 | 1 | Amber Herold | The following files contain a call to showOrSubmitCommand() or submitAppionJob(). These function calls need to be executed to verify the following: |
| 6 | |||
| 7 | 1. Commands using showOrSubmitCommand should pre-pend the Appion Wrapper Path defined in the config file when both Show Command and Run Command are selected by the user. |
||
| 8 | 2. Commands using submitAppionJob should pre-pend the path when Run Command is selected. |
||
| 9 | 3. Commands using submitAppionJob should NOT pre-pend the path when Just Show Command is selected. In this case, the user will need to manually modify the command prior to executing it to include the wrapper path. |
||
| 10 | |||
| 11 | 6 | Amber Herold | Appion wrapper path should look like: *"/opt/myamisnap/bin/appion prepFrealign.py --stackid=1337 --modelid=22 ..."* |
| 12 | 5 | Amber Herold | |
| 13 | 1 | Amber Herold | |
| 14 | 4 | Amber Herold | |_.Filename|_.uses new showOrSubmitCommand()|_.uses old submitAppionJob()|_.Show Command (pass/fail)|_.Submit Command (pass/fail)| |
| 15 | 1 | Amber Herold | |alignSubStack.php|X|||| |
| 16 | |applyJunkCutoff.php|X|||| |
||
| 17 | |bootstrappedAngularReconstitution.php|X|||| |
||
| 18 | |centerStack.php|X|||| |
||
| 19 | |coranSubStack.php|X|||| |
||
| 20 | |createmodel.php|X|||| |
||
| 21 | |createSyntheticDataset.php|X|||| |
||
| 22 | |emdb2density.php|X|||| |
||
| 23 | |imagicMSA.php|X|||| |
||
| 24 | |jumpSubStack.php|X|||| |
||
| 25 | |makegoodavg.php|X|||| |
||
| 26 | |multiReferenceAlignment.php|X|||| |
||
| 27 | |pdb2density.php|X|||| |
||
| 28 | |postproc.php|X|||| |
||
| 29 | 3 | Amber Herold | |prepareFrealign.php|X||pass|pass| |
| 30 | 1 | Amber Herold | |runAppionScript.php.template|X|||| |
| 31 | |runMaskMaker.php|X|||| |
||
| 32 | |runMaxLikeAlign.php|X|||| |
||
| 33 | |sortJunk.php|X|||| |
||
| 34 | |subStack.php|X|||| |
||
| 35 | |uploadFrealign.php|X|||| |
||
| 36 | |uploadmodel.php|X|||| |
||
| 37 | |uploadParticles.php|X|||| |
||
| 38 | |uploadrecon.php|X|||| |
||
| 39 | |uploadstack.php|X|||| |
||
| 40 | |uploadtemplate.php|X|||| |
||
| 41 | |uploadTemplateStack.php|X|||| |
||
| 42 | |uploadtomo.php|X|||| |
||
| 43 | |uploadXmippRecon.php|X|||| |
||
| 44 | |imagic3d0.php||X||| |
||
| 45 | |imagic3dRefine.php||X||| |
||
| 46 | |runAce2.php||X||| |
||
| 47 | |runAffinityProp.php||X||| |
||
| 48 | |runClusterCoran.php||X||| |
||
| 49 | |runCombineStacks.php||X||| |
||
| 50 | |runCoranClassify.php||X||| |
||
| 51 | |runCtfEstimate.php||X||| |
||
| 52 | 3 | Amber Herold | |runDogPicker.php||X|pass|pass| |
| 53 | 1 | Amber Herold | |runEdIterAlignment.php||X||| |
| 54 | |runEmanRefine2d.php||X||| |
||
| 55 | |runImgRejector.php||X||| |
||
| 56 | |runJpgMaker.php||X||| |
||
| 57 | |runKerDenSom.php||X||| |
||
| 58 | |runLoopAgain.php||X||| |
||
| 59 | |runMakeStack2.php||X||| |
||
| 60 | |runMaskMaker.php||X||| |
||
| 61 | |runOtrVolume.php||X||| |
||
| 62 | |runPyAce.php||X||| |
||
| 63 | |runRctVolume.php||X||| |
||
| 64 | |runRefBasedAlignment.php||X||| |
||
| 65 | |runRefBasedMaxlikeAlign.php||X||| |
||
| 66 | |runRotKerDenSom.php||X||| |
||
| 67 | |runSignature.php||X||| |
||
| 68 | |runSpiderNoRefAlignment.php||X||| |
||
| 69 | |runStackIntoPicks.php||X||| |
||
| 70 | |runSubTomogram.php||X||| |
||
| 71 | |runTemplateCorrelator.php||X||| |
||
| 72 | |runTiltAligner.php||X||| |
||
| 73 | |runTiltAutoAligner.php||X||| |
||
| 74 | |runTomoAligner.php||X||| |
||
| 75 | |runTomoAverage.php||X||| |
||
| 76 | |runTomoMaker.php||X||| |
||
| 77 | |runTopolAlign.php||X||| |
||
| 78 | |runUploadMaxLike.php||X||| |
||
| 79 | |uploadimage.php||X||| |