FEI TecnaiTitan installation specifics » History » Version 24
Anchi Cheng, 01/29/2018 04:15 PM
1 | 18 | Anchi Cheng | h1. FEI Tecnai Titan installation specifics |
---|---|---|---|
2 | 1 | Anchi Cheng | |
3 | 15 | Anchi Cheng | h2. Install win32 version of python subpackages |
4 | 1 | Anchi Cheng | |
5 | 19 | Anchi Cheng | Use the 32-bit Windows files (those marked as win32 and certainly not the ones says 64) in http://emg.nysbc.org/projects/leginon/files for these. |
6 | 15 | Anchi Cheng | |
7 | Here is the full list |
||
8 | {{include(Windows_32_External_Package_Installers_Common)}} |
||
9 | 12 | Anchi Cheng | {{include(Comtypes_installer)}} |
10 | 1 | Anchi Cheng | |
11 | 15 | Anchi Cheng | h2. Required scripting from FEI |
12 | |||
13 | 1 | Anchi Cheng | |TEM Scripting or Tecnai Scripting|Request this when purchasing the microscope|Required| |
14 | |TomMoniker Scripting|Should come with TEM Scripting|Required| |
||
15 | |Low Dose Server Library|Should come with the microscope if low dose kit was purchased|Required only if you want to use low dose kit with Leginon's Manual Application| |
||
16 | 2 | Anchi Cheng | |
17 | 13 | Anchi Cheng | h3. Run checkcom.py |
18 | 2 | Anchi Cheng | |
19 | * From a command line window: |
||
20 | <pre>cd C:\python27\Lib\site-packages\pyscope |
||
21 | 14 | Anchi Cheng | C:\python27\python.exe checkcom.py</pre> |
22 | 2 | Anchi Cheng | |
23 | 13 | Anchi Cheng | * The output should at least find typelib for |
24 | 2 | Anchi Cheng | <pre> |
25 | 13 | Anchi Cheng | TEM Scripting |
26 | 2 | Anchi Cheng | </pre> |
27 | 13 | Anchi Cheng | and |
28 | 10 | Anchi Cheng | <pre> |
29 | 13 | Anchi Cheng | TOM Moniker |
30 | 2 | Anchi Cheng | </pre> |
31 | |||
32 | 20 | Anchi Cheng | If you have Low Dose Kit |
33 | <pre> |
||
34 | Tecnai Low Dose Kit |
||
35 | </pre> |
||
36 | |||
37 | You will only find Tecnai Exposure Adaptor (Scripting for film exposure) if you ask FEI for it. |
||
38 | |||
39 | 2 | Anchi Cheng | h2. instruments.cfg |
40 | |||
41 | 7 | Anchi Cheng | cs is *constant for sperical abberation* |
42 | |||
43 | For Tecnai series: |
||
44 | 2 | Anchi Cheng | <pre> |
45 | [TEM] |
||
46 | 21 | Anchi Cheng | class: fei.Tecnai |
47 | 2 | Anchi Cheng | cs: 2.0e-3 |
48 | 1 | Anchi Cheng | </pre> |
49 | |||
50 | 21 | Anchi Cheng | For Halo (Titan column with tecnai compustage): |
51 | 7 | Anchi Cheng | <pre> |
52 | [TEM] |
||
53 | 21 | Anchi Cheng | class: fei.Halo |
54 | 7 | Anchi Cheng | cs: 2.7e-3 |
55 | </pre> |
||
56 | 1 | Anchi Cheng | |
57 | 7 | Anchi Cheng | For Krios (different compustage) |
58 | <pre> |
||
59 | [TEM] |
||
60 | 22 | Anchi Cheng | class: fei.Krios |
61 | 7 | Anchi Cheng | cs: 2.7e-3 |
62 | </pre> |
||
63 | 1 | Anchi Cheng | |
64 | 16 | Anchi Cheng | For Krios EF mode, treated as a separate instrument. i.e. add |
65 | <pre> |
||
66 | [TEM] |
||
67 | 22 | Anchi Cheng | class: fei.EFKrios |
68 | 16 | Anchi Cheng | cs: 2.7e-3 |
69 | </pre> |
||
70 | |||
71 | 24 | Anchi Cheng | h2. Setup fei.cfg |
72 | |||
73 | [[setup fei.cfg]] |
||
74 | |||
75 | 1 | Anchi Cheng | h2. Testing with pyscope |
76 | 2 | Anchi Cheng | |
77 | 15 | Anchi Cheng | For Tecnai series In python command |
78 | 8 | Anchi Cheng | <pre> |
79 | 23 | Anchi Cheng | from pyscope import fei |
80 | t = fei.Tecnai() |
||
81 | 1 | Anchi Cheng | t.getMagnification() |
82 | 7 | Anchi Cheng | </pre> |
83 | 15 | Anchi Cheng | |
84 | 1 | Anchi Cheng | For Krios |
85 | <pre> |
||
86 | 23 | Anchi Cheng | from pyscope import fei |
87 | t = fei.Krios() |
||
88 | 15 | Anchi Cheng | t.getMagnification() |
89 | </pre> |
||
90 | |||
91 | For Krios with EF-TEM mode, add also |
||
92 | <pre> |
||
93 | 23 | Anchi Cheng | from pyscope import fei |
94 | t = fei.EFKrios() |
||
95 | 2 | Anchi Cheng | t.getMagnification() |
96 | </pre> |
||
97 | |||
98 | 6 | Anchi Cheng | You should get the current magnification at the microscope when the main viewing screen is up |
99 | 5 | Anchi Cheng | |
100 | 11 | Anchi Cheng | h2. Trouble Shooting |
101 | |||
102 | [[unable to initializ Tecnai interface error]] |
||
103 | |||
104 | 5 | Anchi Cheng | h2. Programs to open before Leginon Client: None |