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Task #4379

closed

break up apDDprocess.py to separate camera selection and alignment program selection

Added by Anchi Cheng over 8 years ago. Updated almost 7 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Category:
-
Target version:
Start date:
08/12/2016
Due date:
% Done:

0%

Estimated time:

Description

It is time to do this to make new programs easier to add


Related issues 2 (0 open2 closed)

Related to Appion - Feature #4512: Add MotionCor2 from UCSF to appionClosedAnchi Cheng10/06/2016

Actions
Related to Appion - Task #4366: rewrite makeDDRawFrameStack.py and its library for better extensionClosedAnchi Cheng08/10/2016

Actions
Actions #1

Updated by Dmitry Lyumkis over 8 years ago

added scripts for motioncorr2, early commits don't reference this issue number, frame aligner with options:

makeDDAlignMotionCorr2_UCSF.py

example test command:

makeDDAlignMotionCorr2_UCSF.py --mrclist=15nov28b_gr1_00006gr_00049sq_00006hl_00002ed.mrc --rundir=/data2/log-l/frames/15nov28b/ddstack/test --runname=test --projectid=1 --session=15nov28b --align --commit --no-continue --alignbfactor=500 --gpuid=1 --Patch=5,5 --doseweight --totaldose=90.0 --nrw=3 --Iter=10 --Tol=0.5 --bin=1 --alignlabel=e

Actions #2

Updated by Anchi Cheng about 8 years ago

  • Related to Feature #4512: Add MotionCor2 from UCSF to appion added
Actions #3

Updated by Anchi Cheng almost 7 years ago

  • Related to Task #4366: rewrite makeDDRawFrameStack.py and its library for better extension added
Actions #4

Updated by Anchi Cheng almost 7 years ago

  • Status changed from Assigned to Closed
Actions

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