Electron Microscopy Group

09/22/2014

12:35 PM Appion Bug #2935 (Closed): svn rev 18580 trunk/appion/appionlib/apCtf getBestCtfValue() broken

I guess you are right!
My svn history must be damaged. svn diff would show no difference between my working copy ... Tom Houweling

09:15 AM Appion Bug #2935 (Closed): svn rev 18580 trunk/appion/appionlib/apCtf getBestCtfValue() broken

makestack breaks due to: rewritten *getBestCtfValue* method
The following lines pertain to previously checked in ... Tom Houweling

09:36 AM Leginon Bug #2936 (Closed): Svn rev 18580: DM_VERSION harcoded in pyscope/dmsem.py

After upgrading to DM 2.31 streaks appeared in normalized images/movies. After analyzing the issue we found that no... Tom Houweling

05/29/2014

12:41 PM Appion Bug #2800 (New): Myamiweb svn rev 18298 : image viewer displays vertically stretched image

Images displayed on imageviewer in myamiweb have a slightly distorted aspect ratio. ~4% too large vertically. This is... Tom Houweling

05/27/2014

09:46 AM Appion Bug #2788 (Closed): topology alignment script fails shortly before uploading class averages

Tested the fix with rev 18289. Problem is fixed. Tom Houweling

09/26/2013

09:35 AM Leginon Leginon: schema-update r17813 does not register revision

schema updates extract the revision number from the class name.
python schema-r17813.py does not update the revis... Tom Houweling

06/18/2013

11:26 AM Leginon Leginon: rawtransfer.py issues

*rawtransfer.py* (svn rev=17647) creates a mess with frames:
User "yuanhe" ran a session collecting data in @/k2d... Tom Houweling

04/02/2013

04:43 PM Leginon Leginon: Unable to collect binned images

We have configured the K2 dimensions to be 3710 by 3838 for the linear mode in @instruments.cfg@ file and have *comme... Tom Houweling

02/15/2013

04:58 PM Leginon Leginon: RE: Leginon cannot locate bright/dark references

We ran the script on our Windows installation and it did not find the reference mrcs.
The issue is that the path is... Tom Houweling