Electron Microscopy Group

02/02/2017

03:54 PM Appion Bug #4748 (New): Duplicated picks when setting up targets.

In my last data set I have several examples of duplicated picks, for example:
17jan31e_IR_C3_00016gr_00033sq_v02_0... Giovanna Scapin

01/26/2017

01:47 PM Appion Bug #4725 (Closed): Makestack fails to create average stack when generating only Eman boxes

this is the end of the log file:
File "/opt/myamisnap/lib/appionlib/apStackMeanPlot.py", line 37, in makeStackMeanPl... Giovanna Scapin

01/17/2017

02:53 PM Appion Bug #4712 (Assigned): TemplatePicker creates the jpgs in extract/templrun##maps/jpgs

but still tries to read them from xtract/templrun##/jpgs..... I don't know if it is just my case but...
See /gpfs/... Giovanna Scapin

02:50 PM Appion Bug #4711 (Duplicate): Makestack fails

I am trying to make a stack for an old project (16nov11d); I have a template run and I want to make a stack just with... Giovanna Scapin

12/31/2016

11:04 AM Appion Bug #4681 (New): XMIPP clustering 2D failed (twice)

Happy New year! I tried twice to run xmipp2CL2d on the guppy cluster (directories are /gpfs/appion/gscapin/16dec07d/a... Giovanna Scapin

11/14/2016

08:42 AM Appion Bug #4595: parallel unlock failure

A bit more specifics: I run it once, (in /gpfs/appion/gscapin/16nov11d/ctf/ctffind4run1) and the ACE button on the vi... Giovanna Scapin

08:34 AM Appion Bug #4595 (Closed): parallel unlock failure

I tried to run CTFFIND4 on the SEMC-head from appion, it failed with
Traceback (most recent call last):
File "/... Giovanna Scapin

10/03/2016

09:09 AM Appion Bug #4482: Prep job for Frealign fails

Hi Sargis
this was run from the APPION interface, session is 16sep09g and the commands + log files are in /gpfs/appi... Giovanna Scapin

09/30/2016

09:11 AM Appion Bug #4482 (New): Prep job for Frealign fails

With the following message:
Step 3B: from original stack create a new stack file with binning and filtering ready fo... Giovanna Scapin

09/29/2016

01:10 PM Appion Bug #4476: RELION 1.4 (not from Appion)

Thanks Sargis I will look into it
Giovanna Scapin