Electron Microscopy Group

12/08/2014

10:08 AM Appion Bug #2988 (Assigned): tiltalign issues

On guppy:
/ami/data15/appion/14dec03c/tiltalign/autotiltrun9
tarting image 1 ( skip:23, remain:1008 ) id:324578... David Veesler

08/20/2014

09:24 AM Appion Bug #2880: cl2d jobs won't run

Sargis,
The run /ami/data15/appion/14aug14a/align/cl2d7 using xmipp 3 successfully completed.
However, the classes ... David Veesler

08/19/2014

10:54 AM Appion Bug #2880: cl2d jobs won't run

Hi Sargis,
I tried running cl2d using the version 3 of Xmipp as you suggested and got the following error.
/ami... David Veesler

08/17/2014

10:52 AM Appion Bug #2880: cl2d jobs won't run

It still doesn't work but now I am having a new error:
lines= ['\tlibmpi.so.1 => /usr/lib64/libmpi.so.1 (0x0000003... David Veesler

08/09/2014

08:11 PM Appion Bug #2880: cl2d jobs won't run

This still doesn't work for me.
When submitting jobs from the webinterface, I still have the same error message.
Wh... David Veesler

08/07/2014

09:26 PM Appion Bug #2880: cl2d jobs won't run

I just tried again and cl2d jobs don't work either via the webinterface or in submitting the jobfile.
Sargis, here... David Veesler

08/05/2014

07:07 PM Appion Bug #2880 (Closed): cl2d jobs won't run

Jobs are crashing on guppy with the following error message:
!!! WARNING: could not create stack average, average.... David Veesler

04:09 PM Appion Feature #2744: Change the default memory for Cl2d jobs submitted to garibaldi

Appion now allows to choose the queue we want to submit to and adapts the number of processors requested per node acc... David Veesler

07/18/2014

05:03 PM Appion Bug #2852: Makestack2Loop error

Just tried on garibaldi using the option "only use ctffind values" and it works as well.
Thanks a lot.
David David Veesler

12:59 PM Appion Bug #2852: Makestack2Loop error

Thanks Sargis for updating but the issue is still not fixed as i
am getting the same error message. David Veesler