Bug #2988
opentiltalign issues
0%
Description
On guppy:
/ami/data15/appion/14dec03c/tiltalign/autotiltrun9
tarting image 1 ( skip:23, remain:1008 ) id:3245786, file: 14dec03c_011gr_01sq_02cs_03en_00
... Pixel size: 2.05044
... processing mrc for first image
... processing mrc for second image
... Refining tilt axis angles
using slow tilt angle calculator
Traceback (most recent call last):
File "/opt/myamisnap/bin/tiltAutoAligner.py", line 346, in
imgLoop.run()
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 90, in run
results = self.loopProcessImage(imgdata)
File "/opt/myamisnap/bin/tiltAutoAligner.py", line 124, in loopProcessImage
result = self.runTiltAligner(imgdata, tiltdata)
File "/opt/myamisnap/bin/tiltAutoAligner.py", line 310, in runTiltAligner
result = autotilter.processTiltPair(imgpath, tiltpath, picks1, picks2, theta, outfile1, pixdiam, tiltaxis)
File "/opt/myamisnap/lib/appionlib/apTilt/autotilt.py", line 348, in processTiltPair
origin, newpart, snr, bestang = apTiltShift.getTiltedCoordinates(img1, img2, tiltangle, picks1, True,
tiltaxis, msg=msg)
File "/opt/myamisnap/lib/appionlib/apTilt/apTiltShift.py", line 37, in getTiltedCoordinates
filt1 = apImage.highPassFilter(binned1, apix=1.0, radius=20.0, localbin=4/bin)
TypeError: highPassFilter() got an unexpected keyword argument 'radius'
On garibaldi:
/ami/data15/appion/14dec03c/tiltalign/autotiltrun10
Traceback (most recent call last):
File "/opt/applications/myami/trunk/bin/tiltAutoAligner.py", line 346, in <module>
imgLoop.run()
File "/opt/applications/myami/trunk/lib/python2.6/site-packages/appionlib/appionLoop2.py", line 97, in run
self.loopCommitToDatabase(imgdata)
File "/opt/applications/myami/trunk/bin/tiltAutoAligner.py", line 167, in loopCommitToDatabase
self.insertParticlePeakPairs(imgdata, tiltdata, transdata)
File "/opt/applications/myami/trunk/bin/tiltAutoAligner.py", line 181, in insertParticlePeakPairs
imgdata, tiltdata, transdata, self.params['runname'])
File "/opt/applications/myami/trunk/lib/python2.6/site-packages/appionlib/apParticle.py", line 171, in insertParticlePeakPairs
apDisplay.timeString((time.time() - t0)/count*(len(peaktree1)-count)),
ZeroDivisionError: float division
Updated by Anchi Cheng almost 10 years ago
- Status changed from New to Assigned
- Assignee changed from Anchi Cheng to Neil Voss
- Priority changed from Normal to Immediate
Hi, Neil,
Could you quickly fix the one show up on guppy ? It seems that you have two highPassFilter defined in apImage/imagefilter.py. One takes radius, the other one does not.
all computers goes down on Monday.
Updated by Anchi Cheng almost 10 years ago
For a workaround, I renamed the new highPassFilter to highPassFilter2.
Updated by Anchi Cheng almost 10 years ago
- Priority changed from Immediate to High
server is about to go down. Downgrade this to be fixed after the move
Updated by Neil Voss almost 10 years ago
Sorry, I was away from my email. Is it fixed now?
Updated by Anchi Cheng almost 10 years ago
I just renamed it so that it does not duplicate. Please fix it after the server is up again in the new year.
Thanks.
Updated by Neil Voss almost 10 years ago
- Related to Bug #2939: Appion Developers Conference Call Notes added