Leginon

Web server, database, and reduxd on REHL/Rocky Linux 8

07/01/2023 01:03 PM

8

Added by Anchi Cheng 9 months ago
RE: MSI-Tomography throughput reduction after TEM Server ...

Output path and naming incorrect

10/17/2022 01:08 PM

2

Added by Christopher Lilienthal over 1 year ago
RE: Web server, database, and reduxd on REHL/Rocky Linux 8

Smart Leginon: how to select areas within Hole Targeting node

08/30/2022 02:37 PM

7

Added by Anchi Cheng over 1 year ago
RE: Output path and naming incorrect

Smart Leginon: fails to change grid

08/17/2022 03:06 PM

2

Added by Michael Cianfrocco almost 2 years ago
RE: Smart Leginon: how to select areas within Hole Target...

Problem re-installing Leginon client

08/17/2022 01:02 PM

1

Added by Anchi Cheng almost 2 years ago
RE: Smart Leginon: fails to change grid

Increasing astigmatism during aberration free image collection

08/03/2022 03:58 AM

1

Added by Anchi Cheng almost 2 years ago
RE: Problem re-installing Leginon client

Issues with image shift targeting

05/05/2022 07:47 AM

1

Added by Anchi Cheng about 2 years ago
RE: Increasing astigmatism during aberration free image c...

Eduardo Romero

04/22/2021 01:53 PM

11

Added by Michael Cianfrocco about 2 years ago
RE: Issues with image shift targeting

Error using EF service camera

03/27/2022 08:40 AM

2

Added by Anchi Cheng about 2 years ago
RE: Error using EF service camera

TEM Controller options

03/07/2022 10:51 AM

5

Added by Trishant Umrekar about 2 years ago
RE: TEM Controller options

Falcon 4 linear mode

02/25/2022 11:02 AM

2

Added by Trishant Umrekar about 2 years ago
RE: Falcon 4 linear mode

Slack messages

02/17/2022 09:50 AM

1

Added by Anchi Cheng over 2 years ago
RE: Slack messages

Manual Coma Free

Progress on Selectris support?

02/07/2022 04:19 PM

4

Added by Michael Cianfrocco over 2 years ago
RE: Manual Coma Free

tilt non zero after zfocus

09/13/2021 05:58 AM

13

Added by Morgan Beeby over 2 years ago
RE: Progress on Selectris support?

Bob Grassucci

11/04/2021 08:53 AM

3

Added by Bob Grassucci over 2 years ago
RE: tilt non zero after zfocus

Configuration questions

Falcon 4 error with getImage()

10/11/2021 07:24 AM

7

Added by Anchi Cheng over 2 years ago
RE: Configuration questions

Error acquiring image: Error sending request: Request

10/11/2021 07:31 AM

3

Added by Morgan Beeby over 2 years ago
RE: Falcon 4 error with getImage()

Caleigh Azumaya

09/03/2021 05:35 PM

7

Added by Caleigh Azumaya over 2 years ago
RE: Error acquiring image: Error sending request: Request

TVIPS XF416 camera

K3 sensitivity value very low

05/06/2021 01:39 PM

7

Added by Anchi Cheng almost 3 years ago
RE: TVIPS XF416 camera

Caleigh Azumaya

05/06/2021 07:59 PM

11

Added by Anchi Cheng about 3 years ago
RE: K3 sensitivity value very low

Suggestions for facility upgrade

Lens Aberration Correction Calibration for Beam-Image Shift Targeting

01/11/2021 07:33 AM

12

Added by Morgan Beeby about 3 years ago
RE: Suggestions for facility upgrade

ProjectionMode error

Caleigh Azumaya

05/03/2021 06:39 PM

2

Added by Caleigh Azumaya about 3 years ago
RE: ProjectionMode error

Leginon application confusion

10/15/2020 05:57 PM

5

Added by Michael Cianfrocco about 3 years ago
RE: Lens Aberration Correction Calibration for Beam-Image...

01/15/2021 03:18 PM

3

Added by Anchi Cheng over 3 years ago
RE: Leginon application confusion

error log

Krios G4i and K3 with GIF configuration question

01/14/2021 02:56 PM

1

Added by Anchi Cheng over 3 years ago
RE: error log

01/12/2021 04:29 PM

2

Added by Christopher Lilienthal over 3 years ago
RE: Krios G4i and K3 with GIF configuration question

Fringe-free imaging

upgrade to Leginon 3.5: Leginon moves twice as much

01/05/2021 07:12 PM

3

Added by Anchi Cheng over 3 years ago
RE: Fringe-free imaging

Transition from Krios to EFKrios

12/29/2020 05:41 PM

2

Added by Liang Tang over 3 years ago
RE: upgrade to Leginon 3.5: Leginon moves twice as much

variable exposure time per frame

11/10/2020 03:21 PM

2

Added by Christopher Lilienthal over 3 years ago
RE: Transition from Krios to EFKrios

Glacios + selectris + falcon 4

11/02/2020 10:23 AM

2

Added by Liang Tang over 3 years ago
RE: variable exposure time per frame

COMError during atlas collection

10/13/2020 08:37 AM

2

Added by Morgan Beeby over 3 years ago
RE: Glacios + selectris + falcon 4

Laura Koepping

07/17/2020 02:20 PM

2

Added by Anchi Cheng almost 4 years ago
RE: COMError during atlas collection

Question about frames and leginon folders

06/29/2020 10:02 AM

3

Added by Anchi Cheng almost 4 years ago
RE: Question about frames and leginon folders

reduxd segfault

Wei Guo

02/17/2020 11:28 AM

8

Added by Wei Guo almost 4 years ago
RE: reduxd segfault

Leginon overnight crash

Is http://emg.nysbc.org/git/myami/ still available?

11/25/2019 02:47 PM

0

Wei Guo

10/24/2019 03:09 PM

8

Added by Anchi Cheng over 4 years ago
RE: Is http://emg.nysbc.org/git/myami/ still available?

Setting up beam-image shift targeting

Weird strip feature during Leginon K3 dark/bright reference images calibration

11/06/2018 12:00 AM

12

Added by Anchi Cheng over 4 years ago
RE: Setting up beam-image shift targeting

Gatan Rio configuration settings

08/14/2019 03:16 PM

7

Added by Aguang Dai almost 5 years ago
RE: Weird strip feature during Leginon K3 dark/bright ref...

Alternate host names for camera pc

05/22/2019 10:48 PM

6

Added by Anchi Cheng almost 5 years ago
RE: Gatan Rio configuration settings

Specifics of N2_Filling

Colin Deniston

06/07/2019 06:03 PM

1

Added by Anchi Cheng almost 5 years ago
RE: Specifics of N2_Filling

Daniel Alford

06/03/2019 11:39 AM

2

Added by Anchi Cheng almost 5 years ago
RE: Alternate host names for camera pc

Focus step skipped in MSI-T2 PP

Don't forget to update the installation page

04/29/2019 10:44 PM

1

Added by Anchi Cheng about 5 years ago
RE: Focus step skipped in MSI-T2 PP

Per-micrograph image shift for beam tilt refinement

04/09/2019 04:42 PM

1

Added by Anchi Cheng about 5 years ago
RE: Don't forget to update the installation page (RESOLVED)

Does Feature #2727 apply to K3 camera?

04/02/2019 03:36 PM

3

Added by Michael Cianfrocco about 5 years ago
RE: Per-micrograph image shift for beam tilt refinement

Daniel Alford

03/29/2019 12:13 PM

1

Added by Anchi Cheng about 5 years ago
RE: Does Feature #2727 apply to K3 camera?

scope buffer computers

[SOLVED] Error messages while attempting to calibrate microscope with current myami-beta

03/11/2019 12:06 PM

2

Added by Christopher Lilienthal about 5 years ago
RE: scope buffer computers

Leginon microscope software cycles through the magnifications regardless of the preset

02/26/2019 05:14 PM

8

Added by Patrick Goetz about 5 years ago
RE: [SOLVED] Error messages while attempting to calibrate...

03/07/2019 04:38 PM

1

Added by Anchi Cheng about 5 years ago
RE: Leginon microscope software cycles through the magnif...

Feature Request

At what point is information written to the myami database?

02/05/2019 10:16 AM

1

Added by Anchi Cheng over 5 years ago
RE: Feature Request

01/15/2019 05:15 PM

5

Added by Patrick Goetz over 5 years ago
RE: At what point is information written to the myami dat...

K3 Camera?

Is Leginon on Windows using 7-zip?

04/19/2018 04:48 PM

5

Added by Anchi Cheng over 5 years ago
RE: K3 Camera?

How does rawtransfer determination group ownership for images?

11/16/2018 11:31 AM

3

Added by Christopher Lilienthal over 5 years ago
RE: Is Leginon on Windows using 7-zip?

Atlas Creation Error: setDirectStagePosition not in description

12/10/2018 05:38 PM

1

Added by Sargis Dallakyan over 5 years ago
RE: How does rawtransfer determination group ownership fo...

Gatan Rio camera

Arne Moeller

11/20/2018 09:13 AM

3

Added by Anchi Cheng over 5 years ago
RE: Gatan Rio camera

Colin Deniston

11/19/2018 05:19 PM

1

Added by Anchi Cheng over 5 years ago
RE: Atlas Creation Error: setDirectStagePosition not in d...

Using the extension .mrcs instead of .mrc

11/12/2018 12:58 PM

2

Added by Patrick Goetz over 5 years ago
RE: Using the extension .mrcs instead of .mrc

Automating mrc --> tiff?

Users tried processing with 2 different leginon paths, now rawtransfer is stuck

08/20/2018 06:23 PM

4

Added by Sargis Dallakyan over 5 years ago
RE: Automating mrc --> tiff?

Conflict between local leginon.cfg and rawtransfer.py command line options?

08/30/2018 11:10 AM

2

Added by Patrick Goetz over 5 years ago
RE: Users tried processing with 2 different leginon paths...

Issue with preset alignment

08/10/2018 01:21 PM

8

Added by Anchi Cheng over 5 years ago
RE: Conflict between local leginon.cfg and rawtransfer.py...

Rick Baker

07/27/2018 06:10 PM

2

Added by Rick Baker almost 6 years ago
RE: Issue with preset alignment

Ice thickness information into hole finder

Bob Grassucci

07/24/2018 02:36 PM

0

How does leginon find the gain reference - through naming file system or through database?

SOLVED: I've broken redux, now what?

07/11/2018 10:42 AM

6

Added by Anchi Cheng almost 6 years ago
RE: How does leginon find the gain reference - through na...

SOLVED: How does rawtransfer.py decide where images need to go?

07/19/2018 04:31 PM

3

Added by Anchi Cheng almost 6 years ago
RE: I've broken redux, now what?

SOLVED: Question about monitoring rawtransfer.py

07/19/2018 10:59 AM

2

Added by Patrick Goetz almost 6 years ago
RE: How does rawtransfer.py decide where images need to go?

"Process target failed: List index out of range" error during tomography

07/16/2018 03:46 PM

2

Added by Patrick Goetz almost 6 years ago
RE: Question about monitoring rawtransfer.py

Stage issues with Leginon and Talos

06/19/2018 06:36 PM

2

Added by Aguang Dai almost 6 years ago
RE: "Process target failed: List index out of range" erro...

Adam Wier

06/18/2018 01:54 PM

3

Added by Anchi Cheng almost 6 years ago
RE: Stage issues with Leginon and Talos

Help! RawTransfer is stuck -- how to debug?

Webpage no displaying for goniometer calibration and tomo shift graph

06/08/2018 07:09 PM

3

Added by Anchi Cheng almost 6 years ago
RE: Help! RawTransfer is stuck -- how to debug?

How to handle security when multiple groups are using the same leginon system?

06/04/2018 11:55 AM

1

Added by Anchi Cheng almost 6 years ago
RE: Webpage no displaying for goniometer calibration and ...

Atlas Error

Colin Deniston

05/03/2018 09:52 PM

1

Added by Anchi Cheng about 6 years ago
RE: Atlas Error

Atlas error - setDirectStagePosition

04/06/2018 01:10 PM

6

Added by Anchi Cheng about 6 years ago
RE: How to handle security when multiple groups are using...

Rick Baker

04/24/2018 02:18 PM

3

Added by Rick Baker about 6 years ago
RE: Atlas error - setDirectStagePosition

v3.3 camera data mismatch

Jian Shi

03/21/2018 05:50 AM

3

Added by Anchi Cheng about 6 years ago
RE: v3.3 camera data mismatch

SOLVED: Stuck during loading MSI-Tomograph2 application

Tomography tracking during tilt

03/19/2018 05:47 PM

15

Added by Anchi Cheng about 6 years ago
RE: Stuck during loading MSI-Tomograph2 application

Jian Shi

03/08/2018 11:42 PM

3

Added by Anchi Cheng about 6 years ago
RE: Tomography tracking during tilt

Normalization error during atlas publishing

Jason Porta

03/08/2018 11:33 AM

2

Added by Jason Porta about 6 years ago
RE: Normalization error during atlas publishing

XMIPP Wiki instructions out of date

stage position or image shift mode in Exposure collection?

01/31/2018 09:11 AM

1

Added by Anchi Cheng over 6 years ago
RE: XMIPP Wiki instructions out of date

SOLVED: MotionCor2 requires libcufft.so.8.0?

01/29/2018 06:13 PM

4

Added by Aguang Dai over 6 years ago
RE: stage position or image shift mode in Exposure collec...

temcontroller node

Jason Porta

01/30/2018 10:48 AM

2

Added by Jason Porta over 6 years ago
RE: temcontroller node

K2 image and movie rotation and flip

01/25/2018 05:42 PM

6

Added by Patrick Goetz over 6 years ago
RE: MotionCor2 requires libcufft.so.8.0?

SOLVED: chmod +x rawtransfer.py?

01/23/2018 12:45 AM

3

Added by Anchi Cheng over 6 years ago
RE: image shift matrix failed after K2 rotation and flip

Removing data older than x

01/17/2018 02:37 PM

5

Added by Anchi Cheng over 6 years ago
RE: SOLVED: chmod +x rawtransfer.py?

Beam tilt calibration: microprobe vs. nanoprobe

05/05/2017 05:45 PM

3

Added by Anchi Cheng over 6 years ago
RE: Removing data older than x

SOLVED: leginon on Microscope PC wants an image directory -- what should it be?

02/27/2017 07:30 PM

8

Added by Anchi Cheng over 6 years ago
RE: Beam tilt calibration: microprobe vs. nanoprobe

SOLVED: What is the name of the leginon program(s) which run on the camera/microscope PCs?

12/14/2017 03:48 PM

2

Added by Patrick Goetz over 6 years ago
RE: leginon on Microscope PC wants an image directory -- ...

RCT Error Related to CV Module...

12/11/2017 05:36 PM

2

Added by Patrick Goetz over 6 years ago
RE: What is the name of the leginon program(s) which run ...

Duncan Sousa

04/06/2017 11:37 AM

3

Added by Anchi Cheng over 6 years ago
RE: RCT Error Related to CV Module...

frame path column in the leginondb.SessionData table populated from

MSI-RCT (3.0) tilt tracking problem....

07/13/2016 05:45 PM

7

Added by Christopher Lilienthal over 6 years ago
RE: frame path column in the leginondb.SessionData table ...

Duncan Sousa

08/25/2017 06:26 PM

3

Added by Anchi Cheng over 6 years ago
RE: MSI-RCT (3.0) tilt tracking problem....

DM acquired shape different than received shape

Suggestion - Min Std. dev ice thickness option in Exposure targeting

08/17/2017 12:51 PM

4

Added by Anchi Cheng almost 7 years ago
RE: DM acquired shape different than received shape

Andrey Malyutin

03/09/2017 02:22 PM

4

Added by Andrey Malyutin almost 7 years ago
RE: Suggestion - Min Std. dev ice thickness option in Exp...

Refocus second half of tilt series?

Restore calibrations from a previous Leginon 3.1 install to a new Leginon 3.2 install?

08/17/2017 09:23 AM

1

Added by Anchi Cheng almost 7 years ago
RE: Refocus second half of tilt series?

Leginon on CentOS (RHEL) 7 for remote acquisition computer

07/06/2017 02:27 PM

2

Added by Morgan Beeby almost 7 years ago
RE: Restore calibrations from a previous Leginon 3.1 inst...

Movies per minute for 'typical' K2 movie

06/29/2017 11:28 AM

2

Added by Neil Voss almost 7 years ago
RE: Leginon on CentOS (RHEL) 7 for remote acquisition com...