Project

General

Profile

Actions
Copy link

Bug #1225

closed

Viper to EMAN conversion option crashes upload model job

Added by Jeff Speir over 13 years ago. Updated almost 9 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Arne Moeller
Category:
-
Target version:
-
Start date:
03/07/2011
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Manually run two EMAN commands:
proc3d viperfile.mrc tmpfile.mrc icos5fTo2f
then
proc3d tmpfile.mrc emanfile.mrc rot=0,0,90
These should be accessible as a tool tip or link next to the option box. This information was difficult to find.

Description

Hi Jeff,

The Viper to Eman conversion error must be a bug. I had never tried it before today, and I got the same error as you. This needs to be looked into, so you can submit a redmine issue for it if you want.

Lauren

On Mar 4, 2011, at 3:27 PM, Jeff Speir wrote:

Hi Lauren,

I thought of this and I've tried twice (once yesterday, once today) to upload a model in viper orientation and rotate it to EMAN orientation using the checkbox in the Upload Model page. Unfortunately it has crashed both times. Please see:

ami/data17/appion/11jan12a/models/accepted/file_11mar02p48

/ami/data17/appion/11jan12a/models/accepted/file_11mar03k45

Looks like the same error both times, and may be related to using the viper to eman option (?). The model I uploaded previously is identical except already rotated - I used the same parameters to upload but had not checked the rotation option.

Actions
Copy link

Also available in: Atom PDF