Appion

Cesar, what goes into the repository should not include specific site information like /h1/, /h/,/gpfs/, /memc/. Can I suggest that you make a webimg.py.template that does not include site-specific information and push that to the repository instead of what you have ? You can also add the needed configuration in a new section in redux.cfg.template and make webimg.py reads that from the non-deposited redux.cfg

Sure thing.
-cm

From: semcit@nysbc.org<mailto:semcit@nysbc.org>
Sent: Tuesday, October 25, 2022 11:47
To: Bridget Carragher<mailto:bcarr@nysbc.org>; Ed Eng<mailto:eeng@nysbc.org>; roxibelo@gmail.com<mailto:roxibelo@gmail.com>; Cesar Mena<mailto:cmena@nysbc.org>
Subject: [Appion - Feature #13578] (Assigned) redux: configurable archive (webimg) loader

Issue #13578<https://emg.nysbc.org/issues/13578#change-51262> has been updated by Anchi Cheng.

• Status changed from New to Assigned
• Assignee set to cesar mena
• Target version set to Appion/Leginon Future Version

Cesar, what goes into the repository should not include specific site information like /h1/, /h/,/gpfs/, /memc/. Can I suggest that you make a webimg.py.template that does not include site-specific information and push that to the repository instead of what you have ? You can also add the needed configuration in a new section in redux.cfg.template and make webimg.py reads that from the non-deposited redux.cfg

Feature #13578: redux: configurable archive (webimg) loader<https://emg.nysbc.org/issues/13578#change-51262>

• Author: cesar mena
• Status: Assigned
• Priority: Normal
• Assignee: cesar mena
• Category:
• Target version: Appion/Leginon Future Version

When an .mrc is not found by redux an attempt is made to load a corresponding jpg from the webimg archive.

This commit adds an interface to make this functionality configurable. The configuration is optional and backwards compatible.

Configuration options are:

- legacy (default if nothing specified)
- memc
- nccat
- noop
- file: should point to a .py which exports a `path` function with the signature: path(str: mrc_path) -> str which returns an abs path of a jpg version of the passed mrc.

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tested on my sandbox. Ran into one problem:

webimg.py import reduxconfig as local import which caused my reduxd that not launched from redux directory fails. Please use

import redux.reduxconifg

or

from redux import reduxconifg