Feature #1389
closed
Added by Scott Stagg over 13 years ago.
Updated about 9 years ago.
Description
Current implementation of protomo2 wrappers are complicated and buggy. Starting to refactor code and adding some support utilities
Files
Attaching a solution for modifying protomo param file with user provided values.
The prototype param file is read into a string. It contains keys which are replaced with the user provided values and then written out to a new file.
Scott, could you please update the status of this. Is there more to be done?
There is a lot left to do, but protomo2aligner will run right now. It still needs a bunch of stuff added to it. I put comments in the code about the direction I think the script should take. One thing I'd really like to do is have the tomography scripts make animated gifs instead of flash movies. That will reduce dependencies and make something that is exportable. I uploaded some free code I found for generating animated gifs from numpy arrays using PIL. I would love to work on protomo2aligner more, but I don't have the time to do it right. Can I hand it off to you Amber? I will be happy to continue to work with you closely to get it working.
- Status changed from New to Closed
This feature is replaced by #2834
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