1. XMIPP not installed
--- Error installing Xmipp. Could not locate and parse the path to libmpi.so
2. ace2image ctf phase flipping does not work.
makestack2.py --single=start.hed --selectionid=1 --invert --phaseflip --flip-type=ace2image --boxsize=240 --bin=2 --description="test installation" --projectid=1 --preset=upload --session=sample --runname=stack1 --rundir=/myamiImages/appion/sample/stacks/stack1 --no-rejects --no-wait --commit --continue --expId=4 --jobtype=makestack2
File "/usr/bin/makestack2.py", line 623, in phaseFlipAceTwo
apDisplay.printError("ACE 2 failed to create image file:\n%s" % outfile)
File "/usr/lib/python2.6/site-packages/appionlib/apDisplay.py", line 57, in printError
raise Exception, colorString("\n *** FATAL ERROR ***\n"+text+"\n\a","red")
Exception:
*** FATAL ERROR ***
ACE 2 failed to create image file:
/myamiImages/appion/sample/stacks/stack1/sample_06jul12a_00015gr_00028sq_00004hl_00002en.mrc.corrected.mrc
3. redux does not give png image right scale
http://localhost/myamiweb/processing/loadimg.php?filename=/myamiImages/appion/sample/stacks/stack3/montage3.png
imageinfo.amin and imageinfo.amax are null.
4. some eman phase flip stack image look scrambled.
makestack2.py --single=start.hed --selectionid=1 --invert --normalized --phaseflip --flip-type=emanimage --boxsize=240 --bin=2 --description="teset stack making with eman ctf correction since ace2 failed" --projectid=1 --preset=upload --session=sample --runname=stack2 --rundir=/myamiImages/appion/sample/stacks/stack2 --no-rejects --no-wait --commit --continue --expId=4 --jobtype=makestack2
5. NOT A BUG: spider ReferenceFree Alignment/Coran Analysis and /Clustering worked well.
6. uploadtemplate wants to open new tab from stack viewing page.
7. findem.exe:
/usr/bin/findem64.exe: error while loading shared libraries: libgfortran.so.1: cannot o
pen shared object file: No such file or directory
