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Bug #1535
opendanger in losing recon volume result from failed reconupload
Start date:
01/23/2012
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 2.2.0
Show in known bugs:
No
Workaround:
Description
When uploadEMANRefine.py is run and failed in the middle of the run, reruning it would not work giving the following error because EMAN_result directory is removed and recreated at the beginning of the script while threed.1a.mrc in recon directory has been replaces as a link to the now non-existing volume in the new EMAN_result.
Dmitry, please at least give your thought on what you'd like it to do even if you can't work on it now.
Traceback (most recent call last):
File "/usr/bin/uploadEMANRefine.py", line 605, in <module>
upload3D.start()
File "/usr/bin/uploadEMANRefine.py", line 592, in start
self.createChimeraVolumeSnapshot(newvol, iteration)
File "/usr/lib/python2.6/site-packages/appionlib/reconUploader.py", line 589, in createChimeraVolumeSnapshot
sym='c1', mass=self.params['mass'])
File "/usr/lib/python2.6/site-packages/appionlib/apChimera.py", line 89, in filterAndChimera
apDisplay.printError("Volume file is not valid")
File "/usr/lib/python2.6/site-packages/appionlib/apDisplay.py", line 57, in printError
raise Exception, colorString("\n *** FATAL ERROR ***\n"+text+"\n\a","red")
Exception:
*** FATAL ERROR ***
Volume file is not valid
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