Appion

Got Error like this after rerunning a failed eman recon upload. There is a database entry in apRefineIterData with Null in refineClassAverages in the failed run and therefore unique and the iteration ended up with two entries and therefore the program attempted to calculate EulerJumps. Since missing results would be common in recon when it fails, the checking of valid file should be done as early as possible during upload to prevent problems like this.

Traceback (most recent call last):
  File "/usr/bin/uploadEMANRefine.py", line 605, in <module>
    upload3D.start()
  File "/usr/bin/uploadEMANRefine.py", line 599, in start
    self.calculateEulerJumpsAndGoodBadParticles(uploadIterations)        
  File "/usr/lib/python2.6/site-packages/appionlib/reconUploader.py", line 621, in calculateEulerJumpsAndGoodBadParticles
    eulerjump.calculateEulerJumpsForEntireRecon(reconrunid, self.runparams['stackid'])
  File "/usr/lib/python2.6/site-packages/appionlib/apEulerJump.py", line 59, in calculateEulerJumpsForEntireRecon
    jumpdata = self.getEulerJumpData(reconrunid, stackpartid=stackpart.dbid, stackid=stackid, sym=sym)
  File "/usr/lib/python2.6/site-packages/appionlib/apEulerJump.py", line 107, in getEulerJumpData
    jumpdata = self.calculateJumpData(stackpartid, reconrunid=reconrunid, sym=sym)
  File "/usr/lib/python2.6/site-packages/appionlib/apEulerJump.py", line 214, in calculateJumpData
    jumpdata['min'] = distarray.min()
ValueError: zero-size array to ufunc.reduce without identity