Appion

r16333 corrects this in appionLoop2.py
r16334 corrects this in appionTiltSeriesLoop.py

works for me.

My leginon directory is in /ami/data15. I removed --rundir option:

/home/dlyumkis/myami/appion/bin/appion makestack2.py --single=start.hed --selectionid=80 --invert --normalized --xmipp-normalize=4.5 --phaseflip --flip-type=ace2image --boxsize=256 --bin=2 --description="test" --projectid=224 --preset=en --session=11sep24a --runname=stack12 --no-rejects --no-wait --no-commit --limit=1 --continue --expId=9060 --jobtype=makestack2

and the stack was created in /ami/data15/appion/11sep24a/makestack2/stack12