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Bug #2397

open

ParticleFile produced by EMAN for reconUploader does not match particle correctly

Added by Anchi Cheng over 11 years ago. Updated over 11 years ago.

Status:
In Code Review
Priority:
Normal
Assignee:
Dmitry Lyumkis
Category:
-
Target version:
Appion/Leginon 3.0.0
Start date:
06/14/2013
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.2.0
Show in known bugs:
No
Workaround:

Description

readParticleFileByFilePath assumes that the file is sorted by particle number in the refine stack. However, EMAN particle file is pimarily sorted by class.

Related issues 2 (0 open — 2 closed)

Related to Appion - Bug #1873: confict in icosahedral convention and refinement packagesClosedAnchi Cheng06/20/2012

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Related to Appion - Bug #2396: uploadEMANRefine.py does not handle mirror correctlyClosedAmber Herold06/14/2013

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 #1

Updated by Anchi Cheng over 11 years ago

  • Status changed from Assigned to In Code Review
  • Assignee changed from Anchi Cheng to Dmitry Lyumkis

r17656 changes reconUploader instead of sorting particlefile generated by EMAN refinement because the sorting can take a long time if millions of particles are involved.

Testing can be done with other Refinement Euler conversion bug test for Frealign when they are all sorted out.

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