Feature #2470
closedAdd subdivision of Appion directory beyond sessionname according to Leginon session
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Description
More than one Leginon/Appion installation now divide data by username by adding it above the session name. For example, the image path for the leginon rawdata is often /data1/leginon/username/sessionname/rawdata.
Currently the users will need to remember to transfer this in each myamiweb based appion run since there is only one DEFAULT_APPION_PATH per myamiweb or not using DEFAULT_APPION_PATH at all.
To give it a bit more freedom in case that DEFAULT_APPION_PATH is on, say /data2/appion, this feature can parse the image path to find the additional level of division.
Updated by Anchi Cheng about 11 years ago
- Status changed from Assigned to In Code Review
- Assignee changed from Anchi Cheng to Jim Pulokas
Jim,
Just let me know if this is on the right track.
This only affects the case where myamiweb is used to construct appion script. I see that the python script level simply replaces leginon with appion when it make the processing path, and therefore can not handle the case of /data1/ /data2/ differences in the example.
Updated by Amber Herold about 10 years ago
Scott, try using this new feature to add the username to your appion paths. Make sure define('APPION_PARENT_ADDITION',1); is added to your config.php file.