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Bug #2516

closed

Reference images saved as a different instrument than normal acquisition

Added by Anchi Cheng about 11 years ago. Updated almost 11 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Anchi Cheng
Category:
-
Target version:
-
Start date:
09/11/2013
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.1.0
Show in known bugs:
No
Workaround:

Description

This problem happens at FSU where Krios has different magnifications at different kV (or is it just energy-filtered (EF) and non-EF?) Scott made two instruments and switch them instrument.cfg from what I understand.

http://emg.nysbc.org/boards/6/topics/1667 describes a problem where the references can not be found when Leginon is restarted but o.k. if references were acquired in the same start-up.

This means that Leginon can find the references while they reside in memory but can not find them through database query.

I looked at their database, and found that the problem is limited to the instrument named Tecnai but not the one named TecnaiEFTEM. The references saved while as Tecnai (these are at 120 kV HT) are incorrectly recognized as for TecnaiEFTEM (seems to be those at 300 kV).

Now we know what the pattern is, we will need to find a solution

Files

Download all files
gatan.py (14.3 KB) gatan.py Scott Stagg, 09/12/2013 07:06 AM
tecnai.py (62.7 KB) tecnai.py Scott Stagg, 09/12/2013 07:06 AM

Related issues 1 (0 open — 1 closed)

Is duplicate of Leginon - Bug #2517: Corrector instruments in settings gui does not match what Leginon think it is on when initializedClosedAnchi Cheng09/12/2013

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