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Bug #2525

closed

Submit new sq targets from loaded atlas doesn't processed

Added by Jian Shi about 11 years ago. Updated over 9 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Anchi Cheng
Category:
Leginon GUI
Target version:
Appion - Appion/Leginon 3.0.0
Start date:
09/21/2013
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.2.0
Show in known bugs:
No
Workaround:

Description

I notice this bug for a while. After I restart a leginon session and load the atlas, submitting new sq target never went through. It hangs at square acquiring node forever. See attached screen copies.

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SubmitSqTgtErr.png (102 KB) SubmitSqTgtErr.png Jian Shi, 09/21/2013 08:34 AM
Grid_Settings.png (84 KB) Grid_Settings.png Jian Shi, 09/26/2013 02:30 AM
Square_Settings.png (85.2 KB) Square_Settings.png Jian Shi, 09/26/2013 02:30 AM
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 #1

Updated by Anchi Cheng about 11 years ago

Do you mean new targets you selected from the newly loaded atlas? Could you provide screen shot of the "Square" node complete settings to help reproduce the error?

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 #2

Updated by Jian Shi about 11 years ago

Here is the setting for grid and square node

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 #3

Updated by Jian Shi about 11 years ago

Anchi,

I notice today square acquisition hangs at "requesting target transform" after I submitted 2nd batch of square targets on atlas. I have latest version installed today. Rather strange, can you give a quick look?

Thanks,
Jian

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 #4

Updated by Anchi Cheng about 11 years ago

Hi, Jian,

That's becomes I just added the navigation move for target adjustment. It needs new binding. I must caught it in mid commit. If you update again, there should be two more commit twenty minutes after that one : )

The new thing will prevent you from loading old MSI application when you go through Leginon gui to run application. I've made all applications 3.0 version in xml, you can upload them from web admin.php page. If you have your own custom version, just follow the binding requirement shown in #2526 to add them.

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 #5

Updated by Anchi Cheng about 11 years ago

Jian,

I think I know what is wrong. We have never had Square target that requires target adjustment. The application does not have bindings to/from "Target Adjustment" node.

See Transform_Manager_

Since I am updating all applications, I will add these to them, too, for the release.

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 #6

Updated by Anchi Cheng about 11 years ago

  • Target version set to Appion/Leginon 3.0.0

r17930 adds Square bindings to/from "Target Adjustment" to all applicable MSI applications

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 #7

Updated by Anchi Cheng about 11 years ago

  • Status changed from New to In Test
  • Assignee changed from Anchi Cheng to Jian Shi

Does this work now with the new applications?

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 #8

Updated by Jian Shi about 11 years ago

I believe it is working OK now. I will double check on latest version after our service is done.

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 #9

Updated by Anchi Cheng over 9 years ago

  • Status changed from In Test to Closed
  • Assignee changed from Jian Shi to Anchi Cheng
  • Affected Version changed from Appion/Leginon 2.1.0 to Appion/Leginon 2.2.0
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