Appion

Hierarchical clustering fails on guppy during dendrogram construction. Neil says its because xm-grace isn't installed.

... Creating dendrogram file: cluster/dendrogramdoc1-25.spi
executing command: ('CL HC', 'coran/corandata_IMC', '1-25')
executing command: ('5', 'T', '9.2241', 'cluster/dendrogram.ps', 'Y', 'cluster/dendrogramdoc1-25')

waiting for spider......................................................
SPIDER completed in 4 hr 49 min
Traceback (most recent call last):
File "/usr/local/pyappion/bin/clusterCoran.py", line 206, in ?
clusterCoran.start()
File "/usr/local/pyappion/bin/clusterCoran.py", line 174, in start
dendrogramfile = alignment.hierarchClusterProcess(numpart, factorlist, corandata, rundir, dataext=".spi")

File "/export/tmp/appion/usr/local/pyappion/lib/apSpider/alignment.py", line 1289, in hierarchClusterProcess

File "/usr/local/pyappion/lib/apDisplay.py", line 56, in printError
raise Exception, colorString("\n * FATAL ERROR *\n"+text+"\n\a","red")
Exception:

• FATAL ERROR ***
  dendrogram creation (CL HC) failed