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Bug #2840
openRemove EMAN1 functions from Appion
Start date:
07/15/2014
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 3.0.0
Show in known bugs:
No
Workaround:
Description
EMAN1 is deprecated, so it is our best interest to remove any code using EMAN1 programs, such as proc2d, proc3d, etc.
Code to get program counts:
PROGRAM=proc2d; pyfiles=`find . -name '*.py' -type f`; filecount=`grep $PROGRAM $pyfiles | egrep -v ':\s*\#' | cut -d':' -f1 | sort | uniq | wc -l`; instance=`grep $PROGRAM $pyfiles | egrep -v ':\s*\#' | wc -l`; echo $PROGRAM: $instance instances in $filecount files
proc2d: 158 instances in 57 files proc3d: 105 instances in 32 files make3d: 45 instances in 8 files project3d: 13 instances in 4 files refine2d: 6 instances in 3 files applyctf: 6 instances in 2 files startAny: 5 instances in 2 files batchboxer: 4 instances in 3 files classalign: 3 instances in 2 files startcsym: 3 instances in 1 files startoct: 3 instances in 1 files pdb2mrc: 3 instances in 1 files starticos: 3 instances in 1 files iminfo: 2 instances in 2 files runpar: 1 instances in 1 files
Updated by Neil Voss about 10 years ago
- Related to Bug #2939: Appion Developers Conference Call Notes added
Updated by Neil Voss about 10 years ago
- Status changed from New to Assigned
- Assignee set to Scott Stagg
Goal to write a proc2d.py
Updated by Neil Voss about 10 years ago
- Blocked by Bug #2981: Make a highpass filter for Appion added
Updated by Clint Potter about 10 years ago
Discussed during Appion call. proc2d will not work anymore. Scott says we don't want to rely on eman2. Want our old proc2d. Neil found all instances. 158 instances. Can do this with pyami. Need to create a proc2d.py. Scott will take stab at it.
Updated by Neil Voss over 9 years ago
- Blocked by Bug #3327: Remove proc2d from makestack2.py added
Updated by Neil Voss over 9 years ago
- Blocked by Feature #2997: create an Appion alternative to EMAN1 proc2d added
Updated by Anchi Cheng about 9 years ago
Is there a plan for proc3d replacement ?
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