Appion

EMAN1 is deprecated, so it is our best interest to remove any code using EMAN1 programs, such as proc2d, proc3d, etc.

Code to get program counts:

PROGRAM=proc2d; pyfiles=`find . -name '*.py' -type f`; filecount=`grep $PROGRAM $pyfiles | egrep -v ':\s*\#' | cut -d':' -f1 | sort | uniq | wc -l`; instance=`grep $PROGRAM $pyfiles | egrep -v ':\s*\#' | wc -l`; echo $PROGRAM: $instance instances in $filecount files

proc2d: 158 instances in 57 files
proc3d: 105 instances in 32 files
make3d: 45 instances in 8 files
project3d: 13 instances in 4 files
refine2d: 6 instances in 3 files
applyctf: 6 instances in 2 files
startAny: 5 instances in 2 files
batchboxer: 4 instances in 3 files
classalign: 3 instances in 2 files
startcsym: 3 instances in 1 files
startoct: 3 instances in 1 files
pdb2mrc: 3 instances in 1 files
starticos: 3 instances in 1 files
iminfo: 2 instances in 2 files
runpar: 1 instances in 1 files