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Bug #2944

closed

TiltAlign picker crashing

Added by Emily Greene about 10 years ago. Updated about 10 years ago.

Status:
Closed
Priority:
Urgent
Assignee:
-
Category:
-
Target version:
-
Start date:
10/06/2014
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.2.0
Show in known bugs:
No
Workaround:

Description

Tiltpicker is crashing on a seemingly random image from my dataset (14oct05a). This is the second time this has happened-first time running through garibaldi rather than guppy fixed the problem, now both are crashing, strangely on a different pair of images. This is the error in both cases:

50 particles remain, 0.81 sec time remains, 16.15 msec per particle, 0.82 sec last 50 particles
... writing JPEG: guess-cross-ang0.7.jpg
Traceback (most recent call last):
File "/opt/myamisnap/bin/tiltAutoAligner.py", line 346, in <module>
imgLoop.run()
File "/opt/myamisnap/lib/appionlib/appionLoop2.py", line 97, in run
self.loopCommitToDatabase(imgdata)
File "/opt/myamisnap/bin/tiltAutoAligner.py", line 167, in loopCommitToDatabase
self.insertParticlePeakPairs(imgdata, tiltdata, transdata)
File "/opt/myamisnap/bin/tiltAutoAligner.py", line 181, in insertParticlePeakPairs
imgdata, tiltdata, transdata, self.params['runname'])
File "/opt/myamisnap/lib/appionlib/apParticle.py", line 171, in insertParticlePeakPairs
apDisplay.timeString((time.time() - t0)/count*(len(peaktree1)-count)),
ZeroDivisionError: float division

guppy path: /ami/data15/appion/14oct05a/tiltalign/autotiltrun3
garibaldi path: /ami/data15/appion/14oct05a/tiltalign/autotiltrun6

Actions #1

Updated by Anchi Cheng about 10 years ago

  • Status changed from New to In Code Review
  • Assignee set to Neil Voss

r18607 fixed this. When the number of peaktree1 is multiple of 50, the first count (0) caused the division error.

Actions #2

Updated by Emily Greene about 10 years ago

I ran the tilt picker successfully on that dataset today, thanks Anchi!

Actions #3

Updated by Neil Voss about 10 years ago

  • Project changed from 5 to Appion
  • Affected Version set to Appion/Leginon 2.2.0
  • Show in known bugs set to No
Actions #4

Updated by Neil Voss about 10 years ago

  • Status changed from In Code Review to Closed
  • Assignee deleted (Neil Voss)

look good

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