Appion

User Yihu Xie having trouble making substacks in Appion.

Job completed in Appion, but did not show up. Tried in command line with the following results:

[yxie@emgbox02 ~]$ /opt/myamisnap/bin/appion alignSubStack.py --description="open" --class-list-keep=5,18,11 --cluster-id=5 --max-shift=5 --write-file --commit --rundir=/emg/data00/appion/yxie/15sep11a/stacks/clustersub5d --runname=clustersub5d --projectid=47 --expid=684 --jobtype=makestack

... Time stamp: 15sep16q26
... Function name: alignSubStack
... Appion directory: /emg/sw/packages/myamisnap/appion
... Using split database
Connected to database: 'nyap_47'
... Committing data to database
... Run directory: /emg/data00/appion/yxie/15sep11a/stacks/clustersub5d
... Writing function log to: alignSubStack.log
... Uploading ScriptData....
... Found 4 processors on this machine
... Running Appion version 'trunk-r19165'
... Getting stack data for stackid=2
Old stack info: '1.5x box size?'
... Exclude list: []
... Include list: [5, 18, 11]
... Querying database for particles
... Completed in 0.51 sec

... Parsing particle information
Traceback (most recent call last):
File "/emg/sw/packages/myamisnap/appion/bin/alignSubStack.py", line 293, in <module>
subStack.start()
File "/emg/sw/packages/myamisnap/appion/bin/alignSubStack.py", line 185, in start
shift = math.hypot(alignpart['xshift'], alignpart['yshift'])
File "/emg/sw/packages/myamisnap/appion/bin/alignSubStack.py", line 12, in <module>
from appionlib import appionScript
ImportError: No module named appionlib
TypeError: a float is required
/emg/sw/packages/myamisnap/appion/bin/alignSubStack.py
Traceback (most recent call last):