Appion

good catch, thanks Anchi

r19673 adds back combine function that I left out.

Hey Anchi,

Looks like you combined this script with the task monitor?

I'm getting this error when I try to run:

writing bashfile: alignparts_lmbfgs_55.bash
... writing particle & movie data for 15nov28b_gr1_00006gr_00049sq_00008hl_00002ed movie
... writing particle & movie data for 15nov28b_gr1_00006gr_00049sq_00008hl_00003ed movie
writing bashfile: alignparts_lmbfgs_56.bash
... deleting temporary processing files
Traceback (most recent call last):
File "/data2/log-l/progs/myami/appion/bin/polishStack.py", line 429, in <module>
polisher.start()
File "/data2/log-l/progs/myami/appion/bin/polishStack.py", line 411, in start
self.queueRun()
File "/data2/log-l/progs/myami/appion/bin/polishStack.py", line 390, in queueRun
particlePolishMonitor.Main()
File "/data2/log-l/progs/myami/appion/appionlib/apTaskMonitor.py", line 29, in Main
apDisplay.printError('Missing %s for parallel task monitoring' % self.taskid_file)
File "/data2/log-l/progs/myami/appion/appionlib/apDisplay.py", line 65, in printError
raise Exception, colorString("\n * FATAL ERROR *\n"+text+"\n\a","red")
Exception: * FATAL ERROR *
Missing /data2/log-l/appion/15nov28b/stacks/polish_stackid_293/task_jobids.save for parallel task monitoring

Do you have a test stack on your end that you can quickly try this on? My job takes forever to run, so I'm just going to launch it manually

Dmitry

Are you running locally ? What may be needed is a way to figure out if it is running with muliple cluster jobs or multiple subprocesses.

Carl may have one good for testing.

Fixed the error in apParallelTasks.py #4167.