Bug #4106
closederror msg from auto align tilt pair
0%
Description
When I used auto align tilt pair, the following error msgs appear.
Beginning Main Loop
... Pixel size: 1.54
... Refining tilt axis angles
using slow tilt angle calculator
Traceback (most recent call last):
File "/home/cnegro/myami-trunk/appion/bin/tiltAutoAligner.py", line 346, in
imgLoop.run()
File "/home/cnegro/myami-trunk/appion/appionlib/appionLoop2.py", line 87, in run
results = self.loopProcessImage(imgdata)
File "/home/cnegro/myami-trunk/appion/bin/tiltAutoAligner.py", line 124, in loopProcessImage
result = self.runTiltAligner(imgdata, tiltdata)
File "/home/cnegro/myami-trunk/appion/bin/tiltAutoAligner.py", line 310, in runTiltAligner
result = autotilter.processTiltPair(imgpath, tiltpath, picks1, picks2, theta, outfile1, pixdiam, tiltaxis)
File "/home/cnegro/myami-trunk/appion/appionlib/apTilt/autotilt.py", line 348, in processTiltPair
origin, newpart, snr, bestang = apTiltShift.getTiltedCoordinates(img1, img2, tiltangle, picks1, True,
tiltaxis, msg=msg)
File "/home/cnegro/myami-trunk/appion/appionlib/apTilt/apTiltShift.py", line 37, in getTiltedCoordinates
filt1 = apImage.highPassFilter(binned1, apix=1.0, radius=20.0, localbin=4/bin)
AttributeError: 'module' object has no attribute 'highPassFilter'
Updated by Anchi Cheng over 8 years ago
- Status changed from New to Assigned
- Assignee changed from Anchi Cheng to Neil Voss
She is using svn myami-beta branch, it is a mixture of 3.2 and trunk.
Updated by Neil Voss over 8 years ago
- Status changed from Assigned to In Code Review
- Assignee changed from Neil Voss to Anchi Cheng
- Priority changed from Urgent to Normal
sorry should work with latest commit.
Updated by Zhening Zhang over 8 years ago
The problem was solved by using guppy instead of SEMC cluster.
Updated by Anchi Cheng over 8 years ago
- Status changed from In Code Review to Closed
- Target version set to Appion/Leginon 3.3
- Affected Version changed from Appion/Leginon 3.2 to Appion/Leginon 3.3
It turns out she was using trunk afterall on semc-cluster. guppy is on beta.