A bit more specifics: I run it once, (in /gpfs/appion/gscapin/16nov11d/ctf/ctffind4run1) and the ACE button on the viewer did not display any rings, or 0.8, 0.5 best values. Also, under the GUI, the summary talks about 28 CTFs completed. When I tried to generate a stack file after template picking, it failed (in /gpfs/appion/gscapin/16nov11d/stacks/stack1 and stack2; see below). A second attempt to run ctffind4 caused the error above. It may as well be something I did,but I cannot figure out what it could be.
Thanks - Giovanna
......................
.!!! WARNING: no best CTF value for image 16nov11d_IrIn10_022gr_04sq_02hln_05enn-a
.!!! WARNING: no best CTF value for image 16nov11d_IrIn10_022gr_04sq_02hln_04enn-a
.!!! WARNING: no best CTF value for image 16nov11d_IrIn10_022gr_04sq_02hln_02enn-a
.!!! WARNING: no best CTF value for image 16nov11d_IrIn10_022gr_04sq_02hln_03enn-a
.!!! WARNING: no best CTF value for image 16nov11d_IrIn10_028gr_01sq_02hln_02enn-a
.
... finished skipping in 11.76 sec
!!! WARNING: skipped 1115 of 1115 images
... [[ 1115 no reprocess | 0 rejected | 0 wrong tilt | 0 in donedict ]]
... Process images old to new
!!! WARNING: Checking for dd
!!! WARNING: No images were found to process
Beginning Main Loop
!!! WARNING: skipped total of 1115 images.
... to process them again, remove 'continue' option and run makestack2 again.
!!! WARNING: 0 files with the patterns '/gpfs/appion/gscapin/16nov11d/stacks/stack1/16nov11d*.dwn.mrc' will be removed
... Removed 0 of 0 files
!!! WARNING: 0 files with the patterns '/gpfs/appion/gscapin/16nov11d/stacks/stack1/16nov11d*mrc.corrected.mrc' will be removed
... Removed 0 of 0 files
COMPLETE LOOP: 6.01 sec for -1 images
... Closing out function log: makestack2.log
... Ended at Mon, 14 Nov 2016 07:05:43
Total run time: 32.84 sec
... Run directory:
/gpfs/appion/gscapin/16nov11d/stacks/stack1
(