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Bug #4855

open

Better support for helix number

Added by Neil Voss over 7 years ago. Updated over 7 years ago.

Status:
Assigned
Priority:
Normal
Assignee:
Category:
-
Target version:
-
Start date:
03/24/2017
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.2
Show in known bugs:
No
Workaround:

Description

allow export helix number via source:myamiweb/processing/downloadparticledata.php
allow import helix number via source:appion/bin/uploadAppionParticles.py
add helix number to makestack boxfiles for RELION via source:appion/appionlib/apBoxer.py


Files

apBoxer.py (7.21 KB) apBoxer.py custom apBoxer.py for older myami installs Neil Voss, 05/23/2017 04:18 PM

Related issues 1 (1 open0 closed)

Related to Appion - Bug #5389: failed helical pick uploadAssignedRui Zhang12/27/2017

Actions
Actions #1

Updated by Neil Voss over 7 years ago

  • Description updated (diff)
all three features are now working:
  • export helix number via source:myamiweb/processing/downloadparticledata.php
  • import helix number via source:appion/bin/uploadAppionParticles.py
  • helix number to makestack boxfiles for RELION via source:appion/appionlib/apBoxer.py

So, in order to get the above features, you need to update the above corresponding file.

Actions #2

Updated by Neil Voss over 7 years ago

  • Description updated (diff)

RELION needs testing, because I have not upgraded RELION to helix capable version yet.

Actions #3

Updated by Neil Voss over 7 years ago

Okay, I created a custom apBoxer file that should get everything to work.

Actions #4

Updated by Neil Voss almost 7 years ago

  • Related to Bug #5389: failed helical pick upload added
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