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Bug #5079
closedMean/std dev filtration failing
Start date:
07/11/2017
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 3.3
Show in known bugs:
No
Workaround:
Description
Mean/std dev filtration is failing with the following error message:
TypeError: unsupported operand type(s) for -: 'str' and 'int'
Here is the complete log:
... Time stamp: 17jul11g14
... Function name: stackFilter
... Appion directory: /opt/myamisnap/lib
... Processing hostname: node22
... Using split database
Connected to database: 'nyap_31'
... Committing data to database
... Run directory: /gpfs/appion/pacharya/17jul10k/stacks/meanfilt868_3
!!! WARNING: directory '/gpfs/appion/pacharya/17jul10k/stacks/meanfilt868_3' already exists.
... Writing function log to: stackFilter.log
... Uploading ScriptData....
... Found 1 processors on this machine
... Running Appion version 'trunk'
... querying stack particles from stackid=868 at Tue Jul 11 06:14:40 2017
... sorting particles
... received 128442 stack particles in 33.68 sec
... Getting stack data for stackid=868
Old stack info: 'test'
Traceback (most recent call last):
File "/opt/myamisnap/bin/stackFilter.py", line 103, in <module>
subStack.start()
File "/opt/myamisnap/bin/stackFilter.py", line 77, in start
f.write('%i\n' % partnum-1)
TypeError: unsupported operand type(s) for -: 'str' and 'int'
Updated by Ashleigh Raczkowski over 7 years ago
Getting the same error. I'm guessing this is related to my last bug report?
Updated by Anchi Cheng over 7 years ago
- Status changed from New to Assigned
- Assignee set to Neil Voss
- Priority changed from Normal to Urgent
- Target version set to Appion/Leginon 3.3
- Affected Version changed from Appion/Leginon 3.2 to Appion/Leginon 3.3
Updated by Neil Voss over 7 years ago
I did fix that, but something went weird with my commit. I am going to fix it in myami-beta and commit it directly.
Updated by Neil Voss over 7 years ago
- Assignee changed from Neil Voss to Carl Negro
Wait, this is fixed in myami-beta and the line does not match current code:
old line:
f.write('%i\n' % partnum-1)
current myami-beta line:
f.write('%d\n'%(partnum-1))
Something weird with your local copy?
Updated by Anchi Cheng over 7 years ago
Neil, I think you checked just after Carl commited the fix into beta.
Updated by Neil Voss over 7 years ago
I did a fresh git clone
and now it shows correctly. I changed the code to exactly match the trunk with commit commit:912494af
Updated by Anchi Cheng almost 7 years ago
- Status changed from Assigned to Closed
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