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Bug #5079

closed

Mean/std dev filtration failing

Added by Priyamvada Acharya over 7 years ago. Updated almost 7 years ago.

Status:
Closed
Priority:
Urgent
Assignee:
Carl Negro
Category:
-
Target version:
Start date:
07/11/2017
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.3
Show in known bugs:
No
Workaround:

Description

Mean/std dev filtration is failing with the following error message:
TypeError: unsupported operand type(s) for -: 'str' and 'int'

Here is the complete log:

... Time stamp: 17jul11g14
... Function name: stackFilter
... Appion directory: /opt/myamisnap/lib
... Processing hostname: node22
... Using split database
Connected to database: 'nyap_31'
... Committing data to database
... Run directory: /gpfs/appion/pacharya/17jul10k/stacks/meanfilt868_3
!!! WARNING: directory '/gpfs/appion/pacharya/17jul10k/stacks/meanfilt868_3' already exists.
... Writing function log to: stackFilter.log
... Uploading ScriptData....
... Found 1 processors on this machine
... Running Appion version 'trunk'
... querying stack particles from stackid=868 at Tue Jul 11 06:14:40 2017
... sorting particles
... received 128442 stack particles in 33.68 sec
... Getting stack data for stackid=868
Old stack info: 'test'
Traceback (most recent call last):
File "/opt/myamisnap/bin/stackFilter.py", line 103, in <module>
subStack.start()
File "/opt/myamisnap/bin/stackFilter.py", line 77, in start
f.write('%i\n' % partnum-1)
TypeError: unsupported operand type(s) for -: 'str' and 'int'
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