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Feature #5180

open

import RELION autopicked particles

Added by Gabriel Lander about 7 years ago. Updated about 6 years ago.

Status:
New
Priority:
Normal
Assignee:
Gabriel Lander
Category:
-
Target version:
-
Start date:
08/30/2017
Due date:
% Done:

0%

Estimated time:

Description

added functionality to import RELION autopicked particles into appion.
the "--files" parameter requires the full path with an asterisk, and the suffix after the asterisk.
i.e. --files="/gpfs/home/picked/*_autopick.star"

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 #1

Updated by Gabriel Lander about 7 years ago

we should probably change the function name from "uploadEMANParticles.py" to just "uploadParticles.py"

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 #2

Updated by Anchi Cheng about 7 years ago

  • Assignee changed from Anchi Cheng to Gabriel Lander

It is better using subclasses for different functions that shares common feature. I also notice that there is uploadAppionParticles.py

Maybe call yours uploadRelionParticles.py. When I get a chance I will create base class for all three of them if you can't.

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 #3

Updated by Sargis Dallakyan about 6 years ago

Added "Relion star" to web ui so users can see this feature.

Also, Micah has found that it is not working with *_extract.star files. Looked into this; *_extract.star files start with something like:
# RELION; version 3.0-beta-2
This was causing parser to break. Fixed this so it now skips lines starting with "#".

It will be live in our servers tomorrow after nightly updates.

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