Feature #5180
open
import RELION autopicked particles
Added by Gabriel Lander about 7 years ago.
Updated almost 6 years ago.
Description
added functionality to import RELION autopicked particles into appion.
the "--files" parameter requires the full path with an asterisk, and the suffix after the asterisk.
i.e. --files="/gpfs/home/picked/*_autopick.star"
we should probably change the function name from "uploadEMANParticles.py" to just "uploadParticles.py"
- Assignee changed from Anchi Cheng to Gabriel Lander
It is better using subclasses for different functions that shares common feature. I also notice that there is uploadAppionParticles.py
Maybe call yours uploadRelionParticles.py. When I get a chance I will create base class for all three of them if you can't.
Added "Relion star" to web ui so users can see this feature.
Also, Micah has found that it is not working with *_extract.star files. Looked into this; *_extract.star files start with something like:
# RELION; version 3.0-beta-2
This was causing parser to break. Fixed this so it now skips lines starting with "#".
It will be live in our servers tomorrow after nightly updates.
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