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Bug #562

closed

Focus sequence problem

Added by Matthias Brunner over 14 years ago. Updated about 11 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Category:
-
Start date:
05/25/2010
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 2.0.1
Show in known bugs:
Yes
Workaround:

Give 2 different names for different sequences.


Description

If you have 2 steps in focus sequence at the same preset (i.e. repeat for better convergence), defocus measurement fails because defocus is not applied for the second stage.
Preset does not change for the second step.

Fix: Force always a preset change in focus sequence.


Related issues 1 (0 open1 closed)

Is duplicate of Leginon - Bug #1569: defocus of the second of two autofocus sequence with the same preset and defocus adjustment is not setClosedJim Pulokas02/29/2012

Actions
Actions #1

Updated by Matthias Brunner over 14 years ago

Came up in a session with Jim

Actions #2

Updated by Neil Voss over 14 years ago

  • Target version set to Appion/Leginon 2.1.0
  • Affected Version set to Appion/Leginon 2.0.1
Actions #3

Updated by Neil Voss over 14 years ago

  • Status changed from New to Assigned
  • Assignee set to Anchi Cheng
Actions #4

Updated by Anchi Cheng about 14 years ago

  • Assignee changed from Anchi Cheng to Jim Pulokas
  • Show in known bugs set to No

Jim,
You'd better look at this. I thought of just set instrument defocus but not sure if there are other consequences such as if it is tilted and image shifted.
I will test.

Actions #5

Updated by Amber Herold about 14 years ago

  • Target version changed from Appion/Leginon 2.1.0 to Appion/Leginon 2.1.1
  • Show in known bugs changed from No to Yes
  • Workaround updated (diff)

This fix will involve much code making it a risky change this close to release. It will be fixed for the next release.

Actions #6

Updated by Jim Pulokas about 11 years ago

  • Status changed from Assigned to Closed

fixed in related issue

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