Appion

I tried it again-- this time on emanrecon5 instead of emanrecon8 on the unfiltered hk97 data set and I still get the same error trying to correct with the GROEL sax data.

EMAN: proc3d /ami/exdata/appion/10apr15a/recon/emanrecon5/threed.9a.mrc
/ami/exdata/appion/ ... b2306530.spi spidersingle
EMAN 1.9 Cluster ($Date: 2009/02/18 05:12:22 $).
Run 'proc3d help' for detailed help.
Original image : 480x480x480 Mean=1.8e-09 Sigma=1 Min=-6.54 Max=10.7
Sampling : 1 A/pixel Origin = -240,-240,-240
Final image : 480x480x480 Mean=1.8e-09 Sigma=1
Sampling : 1 A/pixel Origin = -240,-240,-240
[vol]b2306530
[outvol]out_b2306530
[scatter]/usr/lib64/python2.4/site-packages/appionlib/data/ampcor5.spi
x99=480 ; box size in pixels
x98=4.6 ; filter limit in angstroms
x80=2.0 ; pixel size
[applyfen]/usr/lib64/python2.4/site-packages/appionlib/applyfen
SPIDER: spider bat/spi @enhance_edit
... completed in 34.23 sec
calculating dimensions...
Traceback (most recent call last):
File "/opt/appion/bin/postProc.py", line 306, in ?
postProc.start()
File "/opt/appion/bin/postProc.py", line 213, in start
apDisplay.printError("amplitude correction failed")
File "/usr/lib64/python2.4/site-packages/appionlib/apDisplay.py", line 56, in printError
raise Exception, colorString("\n * FATAL ERROR *\n"+text+"\n\a","red")
Exception:

• FATAL ERROR ***
  amplitude correction failed
  

Here is an example:

/opt/myamisnap/bin/appion postProc.py --reconiterid=94 -s zz07jul25b -f /ami/data15/appion/zz07jul25b/recon/xmipp_recon46/Xmipp_results/recon_11nov09p19_it008_vol001.mrc --amp=ampcor5.spi --maxfilt=4.6 --apix=1.63 --res=10.01 --sym=c7 --median=2 --zoom=1.0 --contour=2.0 --lp=5.01 --norm --rundir=/ami/data15/appion/zz07jul25b/recon/xmipp_recon46/Xmipp_results/postproc/refine94_12apr16o49 --runname=refine94_12apr16o49 --projectid=303 --expId=8556 --jobtype=postproc