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Bug #737

closed

viewstack.php not displaying option for templatestack creation with $alignId

Added by Dmitry Lyumkis over 14 years ago. Updated about 14 years ago.

Status:
Closed
Priority:
Normal
Category:
Web interface
Target version:
Start date:
07/16/2010
Due date:
% Done:

100%

Estimated time:
Affected Version:
Appion/Leginon 2.0.1
Show in known bugs:
No
Workaround:

Description

fixed, includes templatestack creation option with $alignId in $_GET variable

also deleted the option to create an imagic3d0, which is basically useless

Actions #1

Updated by Dmitry Lyumkis over 14 years ago

updated uploadTemplateStack.py so that it now allows the use of alignId and looks for the associated references or raw particles. If the --alignstackavgs is specified, then it will look for the associated reference file. Otherwise, it will look at the raw particles

also updated viewstack to pass along a "refs=1" flag in the $_GET array and uploadTemplateStack.php to read that

Actions #2

Updated by Dmitry Lyumkis over 14 years ago

  • Status changed from New to In Code Review
  • Assignee changed from Dmitry Lyumkis to Pick-Wei Lau
Actions #3

Updated by Pick-Wei Lau about 14 years ago

  • Status changed from In Code Review to In Test
  • Assignee changed from Pick-Wei Lau to Dmitry Lyumkis

from viewstack, in "exclude" mode, the excluded class averages are not passed over to uploadTemplateStack.

Also, if no class average is selected, it still allows the user to proceed to uploadTemplateStack.php but the python script crashes because no keepfile is passed on.

Basically, I think the uploadTemplateStack button on viewstack.php should be disabled or just do nothing if no class is selected. OR maybe the "exclude" mode should be enabled?

Actions #4

Updated by Dmitry Lyumkis about 14 years ago

  • Status changed from In Test to Closed

tested, works fine for me

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