Appion Manual » History » Version 18
Amber Herold, 04/22/2010 12:50 PM
| 1 | 1 | Amber Herold | h1. Appion Manual |
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| 3 | 7 | Amber Herold | |
| 4 | 1 | Amber Herold | # [[An Introduction to Appion]] |
| 5 | 9 | Amber Herold | ## [[What is Appion?]] |
| 6 | ## [[System Requirements]] |
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| 7 | ## [[Authors]] |
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| 8 | 8 | Amber Herold | # [[Complete Installation]] |
| 9 | 9 | Amber Herold | ## [[Instructions for installing CentOS on your computer]] |
| 10 | ## [[Download additional Software]] |
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| 11 | ## [[Database Server Installation]] |
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| 12 | ## [[Processing Server Installation]] |
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| 13 | 14 | Amber Herold | ### [[Install supporting packages]] |
| 14 | ### [[Download Appion Files]] |
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| 15 | ### [[Perform system check]] |
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| 16 | ### [[Install Appion Packages]] |
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| 17 | ### [[Configure leginon.cfg]] |
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| 18 | ### [[Explanation of Sample Names]] |
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| 19 | ### [[Configure sinedon.cfg]] |
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| 20 | ### [[Install External Packages]] |
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| 21 | ### [[Compile FindEM]] |
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| 22 | ### [[Compile Ace2]] |
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| 23 | ### [[Compile Radermacher]] |
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| 24 | ### [[Install Xmipp]] |
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| 25 | ### [[Test Appion]] |
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| 26 | 9 | Amber Herold | ## [[Web Server Installation]] |
| 27 | 15 | Amber Herold | ### [[Differences between Linux flavors]] |
| 28 | ### [[Install Web Server Prerequisites]] |
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| 29 | ### [[Configure php.ini]] |
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| 30 | ### [[Install Apache Web Server]] |
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| 31 | ### [[Check php information]] |
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| 32 | ### [[Install the MRC PHP Extension]] |
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| 33 | ### [[Install the Web Interface]] |
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| 34 | ### [[Potential Problems]] |
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| 35 | 9 | Amber Herold | ## [[Create a Test Project]] |
| 36 | ## [[Setup Remote Processing]] |
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| 37 | 13 | Amber Herold | # [[Upgrade Instructions]] |
| 38 | 8 | Amber Herold | # [[Appion User Guide]] |
| 39 | 10 | Amber Herold | ## [[Appion and Leginon Database Tools]] |
| 40 | 12 | Amber Herold | ### [[Administration]] |
| 41 | 16 | Amber Herold | #### [[Groups]] |
| 42 | #### [[Users]] |
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| 43 | #### [[Instruments]] |
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| 44 | #### [[Default Settings]] |
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| 45 | #### [[Calibrations]] |
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| 46 | #### [[Applications]] |
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| 47 | #### [[Goniometer]] |
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| 48 | 12 | Amber Herold | ### [[User Management]] |
| 49 | 17 | Amber Herold | #### [[Enable User Authentication]] |
| 50 | #### [[New User Registration]] |
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| 51 | #### [[Retrieve Forgotten Password]] |
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| 52 | #### [[Modify Your Profile]] |
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| 53 | #### [[Logout]] |
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| 54 | 12 | Amber Herold | ### [[Project DB]] |
| 55 | 18 | Amber Herold | #### [[View Projects]] |
| 56 | #### [[Create New Project]] |
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| 57 | #### [[Edit Project Description]] |
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| 58 | #### [[Edit Project Owners]] |
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| 59 | #### [[Create a Project Processing Database]] |
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| 60 | #### [[Unlink a Project Processing Database]] |
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| 61 | #### [[Upload Images to a new Project Session]] |
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| 62 | #### [[Share a Project Session with another User]] |
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| 63 | #### [[View a Summary of a Project Session]] |
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| 64 | #### [[Grid Management]] |
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| 65 | 12 | Amber Herold | ### [[Image Viewers]] |
| 66 | ### [[LOI - Leginon Observer Interface]] |
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| 67 | ### [[RCT]] |
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| 68 | ### [[Tomography]] |
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| 69 | ### [[Hole Template Viewer]] |
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| 70 | 11 | Amber Herold | ## [[Appion Processing]] |
| 71 | 12 | Amber Herold | ### [[Terminology]] |
| 72 | ### [[Common Workflow]] |
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| 73 | ### [[Processing Cluster Login]] |
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| 74 | ### [[Particle Selection]] |
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| 75 | ### [[CTF Estimation]] |
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| 76 | ### [[Import Tools]] |
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| 77 | ### [[Image Assessment]] |
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| 78 | 8 | Amber Herold | ### [[Region Mask Creation]] |